BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947030 Length=1456 Score E Sequences producing significant alignments: (Bits) Value AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4... 2438 0.0 AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate... 1448 0.0 > AT4G13930.1 | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8047692-8050106 REVERSE LENGTH=1822 Length=1822 Score = 2438 bits (1320), Expect = 0.0 Identities = 1408/1451 (97%), Gaps = 3/1451 (0%) Strand=Plus/Plus Query 1 CCATTCAACAATCT-C--CGAAGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCA 57 |||||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||| Sbjct 63 CCATTCAACAATCTACAAAGAAGATGGAACCAGTCTCTTCATGGGGTAACACCTCTCTCG 122 Query 58 TCACCGTAGATCCAGAGATCCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 117 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 123 TCTCCGTAGATCCAGAGATCCACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 182 Query 118 GAATCGAACTTATCGCCTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 177 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GAATCGAACTTATCGCTTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 242 Query 178 GTGCTTTAACCAACAAATACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACG 237 |||| ||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct 243 GTGCCTTAACCAACAAATACTCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACG 302 Query 238 AATTCATCGATCAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 297 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 AATTCATCGATGAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 362 Query 298 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTG 357 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 363 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTG 422 Query 358 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 482 Query 418 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 542 Query 478 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGC 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 543 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGC 602 Query 538 TTGAAGAGAAGGCGTTGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 597 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 603 TTGAAGAGAAGGCGTTGGATTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 662 Query 598 CTAGGGATTGGGATTACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 657 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 663 CTAGGGATTGGGATTACGCTAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 722 Query 658 TTTGTGATATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTG 717 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 723 TTTGTGACATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTG 782 Query 718 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 842 Query 778 TGATCTTCTACAGGAAGGGCCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 837 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 843 TGATTTTCTACAGGAAGGGTCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 902 Query 838 ATGACTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 897 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 ATGATTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 962 Query 898 ATCACCAGATCGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 957 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 ATCACCAGATTGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 1022 Query 958 TCTACGCAAAACAGGTGAAAGCCAATGCTGTTGCACTTGGAAACTACCTAATGAGCAAGG 1017 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1023 TCTACGCAAAACAAGTGAAAGCCAATGCTGTTGCCCTTGGAAACTACCTAATGAGCAAGG 1082 Query 1018 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1142 Query 1078 TTGGATTGACCGGTAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACTTTGAACA 1137 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1143 TTGGATTGACCGGAAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACATTGAACA 1202 Query 1138 AGAATGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACAC 1197 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1203 AGAACGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTGCAC 1262 Query 1198 CCGCAATGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1257 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1263 CCGCGATGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1322 Query 1258 GCCGTGCAGTGACACTGACATTGGACATCCAGAAGACATACGGTAAGTTGTTGAAGGACT 1317 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1323 GCCGTGCAGTGACACTGACGTTGGACATCCAAAAGACATACGGTAAGTTGTTGAAGGACT 1382 Query 1318 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGT 1377 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1383 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGATGTCGAGAAGT 1442 Query 1378 TCTCGGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1437 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1443 TCTCGGCGTCTTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1502 Query 1438 GAtctctctct 1448 ||||| ||||| Sbjct 1503 GATCTTTCTCT 1513 > AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:8031972-8033723 REVERSE LENGTH=1592 Length=1592 Score = 1448 bits (784), Expect = 0.0 Identities = 1235/1451 (85%), Gaps = 37/1451 (3%) Strand=Plus/Plus Query 19 AGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCATCAC--CGTAGATCCAGAGAT 76 ||||||||||||| | ||| |||||||||| | | || | || ||| ||||| ||||| Sbjct 4 AGATGGAACCAGTCTATTCTTGGGGAAACA-C-GCATCTTGACTTCGTCGATCCGGAGAT 61 Query 77 CCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCCTC 136 | | |||||||||||||||||||||| ||| |||||||||||||||||||| || || | Sbjct 62 CTACGACCTAATCGAGAAGGAGAAACATCGTCAATGTCGAGGAATCGAACTCATAGCAGC 121 Query 137 CGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAG-TGCTTTAACCAACAAAT 195 |||||||||||||||| | |||||||| |||||||||||||| ||| ||||||||||||| Sbjct 122 CGAGAATTTCACTTCCGTGGCCGTCATGGAAGCTCTCGGAAGTTGC-TTAACCAACAAAT 180 Query 196 ACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACGAATTCATCGATCAGATCG 255 |||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |||| | Sbjct 181 ACTCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATAG 240 Query 256 AGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGC 314 ||| ||| ||||| ||| | |||||||||| |||||||| |||||| || |||||| Sbjct 241 AGAGTCTCTGCCGCTCACGCTCTCTCGAAGCCTTCCATTGCAATCCAG-AGAAATGGGGC 299 Query 315 GTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTGCTTACACGGCTTTGCTT 374 ||||| ||||||||||| ||||| || || ||||||||||| || ||||| || ||||| Sbjct 300 GTTAACGTTCAGCCTTACTCTGGTTCCCCTGCGAATTTCGCAGCCTACACCGCCTTGCTC 359 Query 375 CAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGT 434 |||||||| |||||||||||||||||||||||||| |||||||||||| | || |||||| Sbjct 360 CAGCCTCATGATCGTATCATGGGGCTTGATTTGCCATCAGGTGGTCATATAACGCATGGT 419 Query 435 TACTATA-CATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCC 493 ||||||| | |||||||| ||||| ||||| ||||| |||||||||||||| | ||||| Sbjct 420 TACTATAGC-TCTGGTGGGAAGAACATCTCCGCGACCTCGATCTACTTTGAAAACCTTCC 478 Query 494 GTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGCTTGAAGAGAAGGCGT- 552 || |||||| ||| || |||||||||||||||||||| || ||||| ||||| || | Sbjct 479 CTACAAGGTGGATTCCAAGACTGGTTACATTGATTACGACAAACTTGAGGAGAAAGC-TA 537 Query 553 TGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATT 612 ||||||||||||| ||||| |||||||||| || | | | || |||||||| ||||||| Sbjct 538 TGGATTTTAGGCCTAAGTTAATTATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATT 597 Query 613 ACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTC 672 |||| ||||| || ||| | || || |||||||||||| ||||||| ||||||||||||| Sbjct 598 ACGCGAGATTCAGGGCTGTCGCCGACAAGGTTGGAGCTTTTTTGCTCTGTGATATGGCTC 657 Query 673 ACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTGAGTACTGTGACGTTG 732 | | ||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||| Sbjct 658 ATAACAGTGCCCTCGTTGCTGCTCAGGAAGCCGCAGACCCGTTCGAGTACTGTGACGTTG 717 Query 733 TGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGATCTTCTACAGGA 792 ||||||| |||| |||||||| ||||| ||||||||||||||||||||||| || || | Sbjct 718 TGACAACGTCAACTCACAAGAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTATAGAA 777 Query 793 AGGGCCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGACTTT-GA-GG 849 |||| ||||||||| || |||||||| ||||||||||||| |||||| || ||| || | Sbjct 778 AGGGACCAAAACCAGCC-AAGAAGGGCCAACCCGAGGGTGAAGTCTACGA-TTTCGACGC 835 Query 850 ACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATCG 909 | |||||||||| ||| |||||||||||||||||| |||||||||||||| || |||| | Sbjct 836 A-AAAATCAACTCTGCGGTATTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTG 894 Query 910 GTGCTCTAGCTGTTGCGTTGAAGCAGGCTAAT-ACTCCTGGGTTCAAGGTCTACGCAAAA 968 ||||||||||||||||||||||||||| | || ||||| | ||||| || || |||||| Sbjct 895 GTGCTCTAGCTGTTGCGTTGAAGCAGG-TTATGGCTCCTAGCTTCAAAGTTTATGCAAAA 953 Query 969 CAGGTGAAAGCCAATGCTG-TTGCACTTGGAAACTACCTAATGAGCAAGGG-T-TACCAG 1025 ||||||||||| ||||||| |||| |||| || ||||||||| | ||||| | || | Sbjct 954 CAGGTGAAAGCTAATGCTGCTTGC-CTTGCAAGCTACCTAATAAATAAGGGATATA-C-T 1010 Query 1026 ATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTG 1085 |||| ||| |||||||||| ||||||||| |||| |||||||||||||||||||||||| Sbjct 1011 CTTGTAACCGATGGAACTGATAACCACCTTATTCTTTGGGATCTTCGCCCTCTTGGATTG 1070 Query 1086 ACCGGTAACAAGGTTGAGAAGCTCTGCGA-TCTGTGC-AGCATTACTTTGAACAAGAATG 1143 ||||||||||||||||||||| | || || | ||||| | |||||||||||||| ||||| Sbjct 1071 ACCGGTAACAAGGTTGAGAAGGTTTGTGAAT-TGTGCTA-CATTACTTTGAACAGGAATG 1128 Query 1144 CAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACACCCGCAA 1203 | ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||| || | Sbjct 1129 CGGTATTCGGAGACACTAGTTTTCTTGCTCCCGGAGGTGTAAGAATCGGTACACCGGCGA 1188 Query 1204 TGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTG-AGCCGT 1262 |||| |||||||||||||||||||||||||||||| |||||||||| |||||| | |||| Sbjct 1189 TGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGAAGATAGGAGAGTTCCTGCA-CCGT 1247 Query 1263 GCAGTGACACTGACATTGGACATCCAGAAGACA-TACGGTAAGTTGTTGAAGGACTTCAA 1321 || |||||| | || |||||||||||| || || ||||||||| || ||||||||||||| Sbjct 1248 GCCGTGACAATCACGTTGGACATCCAGGAG-CAGTACGGTAAGGTGATGAAGGACTTCAA 1306 Query 1322 CAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGTTCTC 1381 ||||||||||||||||||||| || ||||| || | ||||||||||| ||| ||||| | Sbjct 1307 CAAGGGTTTGGTGAACAACAAGGAGATCGATGAGATAAAGGCTGACGTTGAGGAGTTCAC 1366 Query 1382 GGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGAGAtc 1441 | | | ||| ||||||||||| |||| |||||| | ||| | | | |||||||||| Sbjct 1367 GTACGATTTTGATATGCCTGGATTTTTCATCTCTGAG-TCAAGGA-ACG-ATTAGAGATC 1423 Query 1442 tctctctctct 1452 |||| |||||| Sbjct 1424 TCTCACTCTCT 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71786779350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5