BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947127
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT5G32470.1 | Symbols: | Haem oxygenase-like, multi-helical | ... 3101 0.0
> AT5G32470.1 | Symbols: | Haem oxygenase-like, multi-helical
| chr5:12084899-12088603 REVERSE LENGTH=2317
Length=2317
Score = 3101 bits (1679), Expect = 0.0
Identities = 1825/1896 (96%), Gaps = 7/1896 (0%)
Strand=Plus/Plus
Query 1 CTCTCTTTT-CCTTCTCTCTCGTTTTATGCGCTTCCTCTTCCCCACGCGCCTCATCAATA 59
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 9 CTCTCTTTTGCCTTCTCTCTCATTTTATGCGCTTCCTCTTCCCCACGCGCCTCATCAACA 68
Query 60 ACTCATCTCTCGGTCTTCTCCGATCCCCACGCACCGCCGCGCCGATCCGTTCTCTCTGGT 119
|||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 69 ACTCATCTCTCGGTCTCCTCCGATCTCCACACACCACCGCGCCGATCCGTTCTCTCTGGT 128
Query 120 TTCGCAGCAAGTCTCCGGTCTTCCGATCGGCGACAAGTCCAATAATGGCGGCGGCCGCCT 179
|||||| ||||||||||||||||||||||||||| | |||||||||| |||||| ||| |
Sbjct 129 TTCGCACCAAGTCTCCGGTCTTCCGATCGGCGACTACTCCAATAATGACGGCGGTCGCTT 188
Query 180 TCTCTTCATCGTTGTCGATTCCTCCC-AACTCGGAAGAAGCACTTCCTGGGAAGCTATGG 238
|||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||
Sbjct 189 TCTCTTCATCGTTGTCGATTCC-CCCTACCTCGGAAGAAGCACTTCCAGGGAAGCTATGG 247
Query 239 ATCAAGTTTAACAGAGAGTGCCTCTTCTCTATCTACAGCCCCTTCGCCGTCTGCTTAGCC 298
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 248 ATCAAGTTTAACAGAGAGTGTCTCTTCTCTATCTATAGCCCCTTCGCCGTCTGTTTAGCC 307
Query 299 GCCGGAAATCTCAAGATCGACACATTTCGTCAGTATATTGCACAGGATGTTCATTTCCTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCCGGAAATCTCAAGATCGACACATTTCGTCAGTATATTGCACAGGATGTTCATTTCCTT 367
Query 359 AAGGCGTTTGCTCACGCGTATGAACTGGCCGCAGAGTGTGCTGATGATGATGATGATAAA 418
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 368 AAGGCCTTTGCTCACGCGTATGAACTGGCCGCAGATTGTGCTGATGACGATGATGATAAA 427
Query 419 TTGGCAATTTCTGACTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACAACTCATTT 478
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 428 TTGGCAATTTCTGATTTGAGGAAAAGCGTGATGGAAGAATTGAAAATGCACGACTCATTT 487
Query 479 GTACAGGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GTACAGGATTGGGATTTAGACATCAACAAAGAAGTAAGTGTTAACTCAGCAACTTTGAGA 547
Query 539 TACACTGAGTTCTTGTTAGCTACAGCTTCCGGAAAAGTAGAAGGATGCAAAGCTCCCGGC 598
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 548 TACACTGAGTTCTTGTTAGCTACAGCATCCGGAAAAGTAGAAGGATGCAAAGCTCCCGGC 607
Query 599 ATGCTTGATACTCCATTTGAAAAAACAAAAGTTGCTGCTTATACGCTTGGTGCTGTGACA 658
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 608 ATGCTTGATACTCCATTTGAAAAAACAAAAGTTGCTGCCTACACGCTTGGTGCTGTGACA 667
Query 659 CCTTGCATGAGGTTGTATGCCTTTCTCGGTAAGGAGTTTGGAGCACTTCTTGATCTGAGT 718
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 668 CCTTGCATGCGGTTGTATGCCTTTCTCGGTAAGGAGTTTGGATCACTTCTTGATCTGAGT 727
Query 719 AATGTGAACCATCCCTACAAGAAATGGATCGATAATTATTCTAGTGATGCTTTCCAGGCA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GATGTGAACCATCCCTACAAGAAATGGATCGATAATTATTCTAGTGATGCTTTCCAGGCA 787
Query 779 TCAGCCAAGCAAACTGAAGACTTGCTTGAGAAGCTTAGTGTCTCTATGACTGGTGAAGAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TCAGCCAAGCAAACTGAAGACTTGCTTGAGAAGCTTAGTGTCTCTATGACTGGTGAAGAA 847
Query 839 TTGGACATAATTGAAAAATTGTATCAACAGGCTATGAAACTTGAAGTAGAATTCTTCCAT 898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 848 TTGGACATAATTGAAAAATTGTATCAACAGGCTATGAAACTTGAAGTAGAGTTCTTCCAT 907
Query 899 GCCCAACCGCT-GCTTCAGCCTACCATAGTTCCACTGGTCAAGAACCACTCAAAAGATGA 957
||||| || || || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 908 GCCCAGCCACTTGCC-CAGCCTACCATAGTTCCACTGCTCAAGAACCACTCAAAAGATGA 966
Query 958 TCTGGTGATCTTTTCTGATTTTGATCTGACTTGCACCGTTGTGGATTCTTCTGCTATTTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TCTGGTGATCTTTTCTGATTTTGATCTGACTTGCACCGTTGTGGATTCTTCTGCTATTTT 1026
Query 1018 AGCGGAAATAGCAATTGTAACTGCCCCAAAAGATGAACAGAGTCGATCTGGACAACAAAT 1077
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1027 AGCGGAAATAGCAATTGTAACTGCCCCAAAAGATGAACAAAGTCGATCTGGACAACAAAT 1086
Query 1078 TCAGCGGATGCTCTCATCTGACCTTAAGAACACCTGGAATCTACTTTCTAAACAATACAC 1137
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TCATCGGATGCTCTCATCTGACCTTAAGAACACCTGGAATCTACTTTCTAAACAATACAC 1146
Query 1138 AGAGCATTATGAAGAATGCATAGAGAATATTCTGAATAAAGAA-AAAGCGGACAAGTTTG 1196
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1147 AGAGCATTATGAAGAATGCATAGAGAGTATTCTGAATAAA-AAGAAAGCGGACAAGTTTG 1205
Query 1197 ACTATGAGGGTTTATGTAAAGCACTAGAGCAGCTTTCAGATTTTGAGAAAGAGGCAAACA 1256
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1206 ACTATGAAGGTTTATGTAAAGCACTAGAGCAGCTTTCAGATTTTGAGAAAGAGGCAAATA 1265
Query 1257 ATCGAGTGATCGAGTCTGGTGTACTCAAGGGCCTGAATCTCGAAGACATTAAGCGCGCTG 1316
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1266 ATCGAGTGATTGAGTCTGGTGTACTCAAAGGCCTGAATCTTGAAGACATTAAGCGCGCTG 1325
Query 1317 GGGAAAGGTTAATTCTTCAAGATGGCTGCATCAATGTCTTCCAGAAAATTTTAAAAACTG 1376
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1326 GGGAAAGGTTAATCCTTCAAGATGGATGCATCAATGTCTTCCAGAAAATTTTAAAGACTG 1385
Query 1377 AGAATCTGAATGCAGAACTTCACGTGCTTTCCTATTGTTGGTGTGGCGACCTCATCAGGG 1436
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1386 AGAATCTGAATGCAGAACTTCATGTGCTTTCCTATTGTTGGTGTGGTGACCTCATCAGGG 1445
Query 1437 CAGCCTTTTGTGCAGGCGGAGTAGATGCAGTGAAAGTACATGCAAATGAATTCACATTTG 1496
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1446 CAGCCTTTTCTGCAGGCGGAGTAGATGCAGTGGAAGTACATGCAAATGAATTCACATTTG 1505
Query 1497 AGGAATTCATCTCGACAGGTGAGATTGAAAGAAAGGTGGAATCCCCGATTAACAAAGCTC 1556
|||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1506 AGGAATCCATCTCGACTGGTGAGATCGAAAGAAAGGTGGAATCCCCAATTAACAAAGCTC 1565
Query 1557 AGCAGTTCAAAAGTATCCTACAAAACAGAAAGGATGAGAACACGAAGAAAAGTTTCTTGA 1616
| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1566 AACAGTTCAAAAGTATCCTACAAAACAGAAAGAATGAGAACAATAAGAAAAGTTTCTTGA 1625
Query 1617 GTGTGTATATTGGAGATTCGGTAGGTGACTTGTTGTGTCTCCTCGAAGCAGATATAGGAA 1676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1626 GTGTGTATATTGGAGATTCGGTAGGTGACTTGCTGTGTCTCCTCGAAGCAGATATAGGAA 1685
Query 1677 TAGTGGTTAGCTCTAGCTCGAGTCTCAGGAGAGTTGGAAGCCATTTTGGTGTCTCATTTG 1736
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1686 TAGTGGTTAGCTCTAGCTCGAGTCTCAGGAGAGTTGGAAGCCATTTTGGGGTCTCATTTG 1745
Query 1737 TGCCTTTGTTTTCTGGAATCGTCCAGAAACAGAAACAACACACTGAAGAAGAATCATCAT 1796
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1746 TGCCTTTGTTTTCTGGAATCGTCCAGAAACAGAAACAACACACTGAAGAATCATCATCAT 1805
Query 1797 CAACCTGGAAAGGACTCTCTGGCACACTTTACACAGTTTCAAGCTGGGCTGAAATTCATT 1856
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1806 CAGCATGGAAAGGACTCTCTGGCACACTTTACACAGTTTCAAGCTGGGCCGAAATTCATT 1865
Query 1857 CATTCGCTCTTGGATGGGAGTAAACCGGTAGAACAA 1892
|||||||||||||||||||||||| |||||||||||
Sbjct 1866 CATTCGCTCTTGGATGGGAGTAAATCGGTAGAACAA 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5