BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947186 Length=1180 Score E Sequences producing significant alignments: (Bits) Value AT5G35460.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1805 0.0 > AT5G35460.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13672539-13674739 FORWARD LENGTH=1398 Length=1398 Score = 1805 bits (977), Expect = 0.0 Identities = 1058/1097 (96%), Gaps = 5/1097 (0%) Strand=Plus/Plus Query 45 GAAGATTCAAACTCCAATGGACTAGACTCTTTTGATGCTGTTAAACAACGTTTCAAGGAT 104 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 72 GAAGATTCAAACTCCAATGGACTAGACTCGTTTGATGCTGTTAAACAACGTTTCAAAGAT 131 Query 105 CGATCAAAGAAAGTTGTTCAGACAAGAGAGTTATTGTCTAAACAAGCGGTACAAACGCGT 164 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 132 CGATCAAAGAAAGTTGTTCAGACGAGAGAGTTGTTGTCTAAACAAGCGGTACAAACGCGT 191 Query 165 GAGATCTTGTCTAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 224 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GAGATCTTATCGAAACAAGCCGTTAAGATCGCTAAACAAGCCGAAGAACATGAGAGATTC 251 Query 225 ATCAATAAGGTGACACATCTTGTTGGAGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 284 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 252 ATCAATAAGGTGACACATCTCGTTGGTGTGCTTGGATTTGGAGGTTTTTGTTTCCTACTT 311 Query 285 GGTGCAAGACCTCAGGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 344 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGTGCAAGACCTCAAGACATTCCTTTAGTTTACTGTTTCTTCTATGTGATCTTTGTTCCT 371 Query 345 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 CTTCGATGGATATATTACCGGTTTAAGAAATGGCATTATTATCTTCTGGACTTTTGCTAC 431 Query 405 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAGAAGCTTTTC 464 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 432 TATGCCAATACAATCTTCTTGGTTGATCTTCTTCTGTATCCTAAGAATGAAAAGCTTTTC 491 Query 465 ATGGTTTGCTTTTCCTTTGCAGAGGGACCGTTGGCGTGGGCAATTATTGTGTGGCGTTGC 524 |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct 492 ATGGTTTGCTTTTCCTTTGCTGAGGGACCATTGGCGTGGGCGATTATTGTCTGGCGTTGC 551 Query 525 AG-CTTGGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 583 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 552 AGTCT-GGTTTTTAGTTCGCCGGATAAGATTGTTAGTGTTCTTATACATCTCTTACCTGG 610 Query 584 GCTCGTGTTCTTCACGATTAGGTGGTGGAATCCAGCGACCTTTGCAGCTATGCACCCTGT 643 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 611 GCTCGTGTTTTTCACGATTAGGTGGTGGAATCCAGCGACTTTTGCAGCTATGCACCCTGT 670 Query 644 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTTACATG 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 671 AGGCACTGATCGTAGGGTTTCATGGCCTTATGTTGAAGACAAAGCTTACCTATTCACATG 730 Query 704 GCTGTTTCTTATCCCCTTGGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 763 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 731 GCTGTTTCTCGTCCCCTTAGTCGTTTATACTCTTTGGCAAGTGCTCTATTTTCTAATCGT 790 Query 764 CAATGTCCTGCGTAGGCAGAGACTCCTAAGAGATCCTGAAGTTATGACTTCTTACAGAGA 823 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 791 CAATGTCCTGCGTAGGCAGAGACTCCTTAGAGATCCTGAAGTTATGACTTCTTACAGAGA 850 Query 824 GCTGTCGAAGAAAGCTGAAAAAGCAGACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 883 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 851 GCTGTCGAAGAAAGCTGAAAAGGCAAACAATAAGTTGTGGCAGCTGAGCGGTCTGCTAGG 910 Query 884 GGATCAGAACCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTTGCAACCAT 943 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 911 GGATCAGAATCGTATATGGATGTACATCCTATTCCAGGCCATCTTCACGGTGGCAACCAT 970 Query 944 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATCTGATCTTTCAAATCCTGAA 1003 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || Sbjct 971 GGCATTGACCGTACCGATCTTCCTATCTTATAGACTTCATGTGATCTTTCAGATCCTAAA 1030 Query 1004 GATTTCTGCGGCAGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1063 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 GATTTCTGCGGCTGTGTGGAACGGAGGGAGCTTTTTACTAGAGGTAATGCCACGGCAAGT 1090 Query 1064 GATCCAGAAAGAGAAGAAGAA-A--GCAGAGATGCAGCCTATAGAGGAGCAGATACCACA 1120 ||||||||||||||||||||| | || ||||||||||| |||||||||||||||| ||| Sbjct 1091 GATCCAGAAAGAGAAGAAGAAGAAAGCTGAGATGCAGCCGATAGAGGAGCAGATACTACA 1150 Query 1121 CCATGAACCTGTGTCAC 1137 |||||| ||||||||| Sbjct 1151 TCATGAAGCTGTGTCAC 1167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57931428930 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5