BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947216

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35740.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   586    5e-167


> AT5G35740.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr5:13910418-13911160 REVERSE LENGTH=579
Length=579

 Score =  586 bits (317),  Expect = 5e-167
 Identities = 373/400 (93%), Gaps = 3/400 (1%)
 Strand=Plus/Plus

Query  1    TCATTGCCTTCT-TGGGAAACATGTCAACTTTCTTGATAAGGATACTTCTTCCTTTGCTT  59
            |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  46   TCATTGCCTTCTCT-AGAAACATGTCAACTTTCTTGATAAGGATACTTCTTCCTTTGCTT  104

Query  60   ATCATAGCAATTACTATTCCTCAATGGTCAGAGGCAGAGTCGGAACAATGGTGCATAGCG  119
            ||||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||
Sbjct  105  ATCATAGCAATGACTCTTCCTCGACGTTCAGAGGCAGAGTCGGAACAATGGTGCATAGCG  164

Query  120  GATGAACAAACGCCAGACGATGAGCTGCAGGCAGCCTTAGACTGGGCTTGCGGGAAAGGC  179
            |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| 
Sbjct  165  GATGAACAAACGCCAGACGATGAGTTGCAAGCAGCCTTAGACTGGGCTTGCGGAAAAGGT  224

Query  180  GGAGCAGACTGCAGCAAAATGCAGCAGGAAAACCAGACTTGCTTCTTACCCAACACAATC  239
            |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct  225  GGAGCAGACTGCAGCAAAATGCAGCAGGAAAACCAGCCTTGCTTCTTGCCTAACACAATC  284

Query  240  AGGGATCATGCCTCCTTTGCTTTTAACAGTTATTACCAAACTTATAAGCACAAAGGTGGT  299
            || |||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||
Sbjct  285  AGAGATCATGCCTCCTTTGCTTTCAACAGTTACTACCAAACTTATAAAAACAAAGGTGGT  344

Query  300  TCTTGTTACTTCAAAGGAACTGCCATGATCACTGAGCTTGACCCCAGTCATGGTTCTTGC  359
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  345  TCTTGTTACTTCAAAGGAGCTGCCATGATCACTGAGCTTGACCCCAGCCATGGTTCTTGC  404

Query  360  CACTATGAGTATAACCCCTGATTCCAATGAGACAGCCAAA  399
            || ||||||||||||||||||||| || || ||||| |||
Sbjct  405  CAGTATGAGTATAACCCCTGATTCAAACGACACAGC-AAA  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5