BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947269 Length=1277 Score E Sequences producing significant alignments: (Bits) Value AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5... 2159 0.0 AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1... 1266 0.0 > AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5:14273384-14277026 FORWARD LENGTH=1624 Length=1624 Score = 2159 bits (1169), Expect = 0.0 Identities = 1242/1278 (97%), Gaps = 2/1278 (0%) Strand=Plus/Plus Query 1 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 174 Query 61 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 234 Query 121 GTGGTCCAGATTTACC-TGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 179 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 235 GTGGTCCAGATTTACCATG-ATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 293 Query 180 GTCATCAGATCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGG 239 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 294 GTCATCAGACCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGG 353 Query 240 AGGACGCACACAAGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGT 299 ||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 354 AGGACGCACACAACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGT 413 Query 300 AATTGACTGTGAACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAAT 359 |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 414 AATTGATTGTGAACCCAAGCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAAT 473 Query 360 TCTGCGGAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCA 419 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 474 TCTGCGTAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCA 533 Query 420 GTCACTGGAGCTTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 479 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 534 GTCACTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 593 Query 480 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGA 539 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 594 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGA 653 Query 540 TAATCTTGTTGCCAAAGGGATAGTGCTCTCATTCGTAACAGACTTCTTCAAGGAGTATTT 599 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 654 TAATCTTGTTGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTT 713 Query 600 GGTTGAGAACAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAA 659 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 714 GGTTGAGAACAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAA 773 Query 660 CCTTATGGATTTCCTACCACCTGTTAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 719 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 774 CCTTATGGATTTCCTACCACCAGTAAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 833 Query 720 GAATGAGGGATTGACCGATCTAGTAGAATACCATTCAAAGAAAATGTTTGAGGTGAAACT 779 |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 834 GAATGAAGGATTGACTGATCTAGTAGAGTACCATTCAAAGAAAATGTTTGAGGTGAAACT 893 Query 780 AAAGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTCGACGAAGT 839 | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 894 GAGGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTAGACGAAGT 953 Query 840 CATTGAATCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCG 899 |||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||| Sbjct 954 CATTGAATCGGTGAAGCAACAGATCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCG 1013 Query 900 TGTCGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 959 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 TGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 1073 Query 960 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1074 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTGTAC 1133 Query 1020 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1193 Query 1080 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTCGC 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1194 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGC 1253 Query 1140 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACAAACTCAAAGGGCAGGCAAACCTT 1199 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1254 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGGCAAACCTT 1313 Query 1200 TGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1259 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1373 Query 1260 GATCTATGTTCCTAATAA 1277 |||||||||| ||||||| Sbjct 1374 GATCTATGTTTCTAATAA 1391 > AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1:24226111-24228970 FORWARD LENGTH=1500 Length=1500 Score = 1266 bits (685), Expect = 0.0 Identities = 1077/1265 (85%), Gaps = 32/1265 (3%) Strand=Plus/Plus Query 13 TCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 72 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 85 TCTTGGTTTATGAGCTCAAAGGAGAAGCCCACTCTCGGAGGTACGCGGATTAAGACCCGC 144 Query 73 AAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATT 132 ||| ||||||||||||||||||| |||||||| || |||||||||||| | || |||||| Sbjct 145 AAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATT 204 Query 133 TACCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATT-GAGTCATCAGATCT 191 || |||||||||||||||||||||||||||||||||| |||| || |||||||| ||||| Sbjct 205 TATCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAGAAGT-TTAGAGTCATCTGATCT 263 Query 192 TAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGGAGGACGCACACA 251 ||||||| ||||||| ||||| || |||||||||||||||||||| |||||||| || || Sbjct 264 TAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACTCA 323 Query 252 AGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGTAATTGACTGTGA 311 | |||| |||||||||||||||||||||||||||| | |||||| |||| |||||||| Sbjct 324 AACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTGA 383 Query 312 ACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAATTCTGCGGAGGAA 371 ||| | ||||||||| ||||| || || ||||| ||||||||||||||| |||||||||| Sbjct 384 ACCAAAGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGGAA 443 Query 372 -GCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCAGTCACTGGAGC 430 ||||| ||| || ||||||||||| |||||||| ||||||||| | ||||||||||||| Sbjct 444 AGCCTT-CCTTATTAAGAACCTTGAGAATGTTACACGGAGATTCTTACAGTCACTGGAGC 502 Query 431 TTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCAGA 490 |||||||||| || || |||||||||||||| || |||||||||||||| ||||| |||| Sbjct 503 TTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCACTTGCATTTTCACAGA 562 Query 491 AGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGATAATCTTGTTG 550 ||||||||||||||||| | || ||||| |||||||||||||| ||||||| |||||||| Sbjct 563 AGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATACTCTTGTTG 622 Query 551 CCAAAGGGATAGTGCTCTCA-TTC-GTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAA 608 ||||||||||||| ||||| || ||||||||||||||||| || |||||||||||||| Sbjct 623 CCAAAGGGATAGT--TCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAA 680 Query 609 CAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAACCT-TATGG 667 ||||||||| |||||||| ||||||||||||||||| || ||||| ||||| || | ||| Sbjct 681 CAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCT-TGG 739 Query 668 ATTTCCTACCACCTGTTAGGCG-ATCTGCTGAAAGTTTTGCGGAACATTTCACGAATG-A 725 | ||||| ||||| | ||| | || | ||||||||||| || |||||||| || | | Sbjct 740 AGTTCCTGCCACCCACAAAGCGGA-CTACAGAAAGTTTTGCCGAGCATTTCACTAAGGCA 798 Query 726 GGGATTGACCGATCTAGTAGAATACCATTCAAAG-AAAATGTTTGAGGTGAAACTAAAGG 784 || |||||| | ||| ||||| ||| || |||| ||||| ||||||||||| || |||| Sbjct 799 GG-ATTGACAGCTCTGGTAGAGTACAATG-AAAGGAAAATATTTGAGGTGAAGCTGAAGG 856 Query 785 AAATCAAAACCGTTCTTACAAGC-AAGGTCACAGAGGAAAGTAAT-GTCGACGAAGTCAT 842 |||||||| | || ||||| ||| ||| | |||||||||| ||| || || ||||| | Sbjct 857 AAATCAAAGCGGTCCTTACGAGCCAAG-TGACAGAGGAAA-TAAACGTAGATGAAGTGAC 914 Query 843 TGAA-TCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCGTG 901 |||| | ||||||||||||| | ||||| || ||| |||| || | ||| ||||||| || Sbjct 915 TGAAAT-GGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCAGAGACTGAGGTTGTGCATG 973 Query 902 TCGTT-TGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAAT 960 | | | |||||||| ||||| |||||||||| |||||||| |||||||||||||| ||| Sbjct 974 T-GATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAGAAT 1032 Query 961 GCAAATTCTGT-TCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019 | ||| |||| | | ||||| |||||||||||||| || |||||||||||| | |||| Sbjct 1033 TCGAATGCTGTAT-TACGCCAAGTGAAAACATGGGCACCCCTTCTGAACACGCTGTGTAG 1091 Query 1020 CAGCGGAAAGC-TAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATG 1078 || ||| || | | ||| ||||||||||||| ||||| || ||||||||||||||||||| Sbjct 1092 CACCGGGAA-CATGGAGATGGAACTGATGTATAAAGTACAGATGCAATGCTATGAGGATG 1150 Query 1079 CAAAGCTTATGAAAGT-TTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTC 1137 ||||||| |||||||| ||||| || |||||||| || || |||||||| ||||| || Sbjct 1151 CAAAGCTGATGAAAGTGTTTCCT-GAGGTAGTGAGATCTCTGTATGAACTGGATGTGCTT 1209 Query 1138 GCTGAAGACACCATTCTCCACTGGT-TCCGTAAAGGAACAAACTCAAAGGGCAGGCAAAC 1196 || |||||||||||||| ||||||| || | ||||| || ||| | |||||||||||||| Sbjct 1210 GCGGAAGACACCATTCTGCACTGGTATC-GCAAAGGGACCAACCCTAAGGGCAGGCAAAC 1268 Query 1197 CTTTGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTG 1256 |||||||| | || || || |||||||||||||| |||||||| || ||||| ||||| Sbjct 1269 GTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGCCGAAGAAGAGGAGTG 1328 Query 1257 AGTGA 1261 ||||| Sbjct 1329 AGTGA 1333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62800881795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5