BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947314 Length=1876 Score E Sequences producing significant alignments: (Bits) Value AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3... 2689 0.0 AT1G58030.1 | Symbols: CAT2 | cationic amino acid transporter 2... 1133 0.0 > AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3 | chr5:14590166-14594384 FORWARD LENGTH=2241 Length=2241 Score = 2689 bits (1456), Expect = 0.0 Identities = 1769/1914 (92%), Gaps = 46/1914 (2%) Strand=Plus/Plus Query 1 TTGTCGTTTTAATGGGTTTTATGGTGAATACGCAAAACGAAGAT-G-G-TAGTGGTAACC 57 |||| |||| ||||||||||||||||||| ||||||| |||| | | | | ||||| ||| Sbjct 101 TTGTTGTTTAAATGGGTTTTATGGTGAATTCGCAAAATGAAGGTGGTGTTGGTGGTGACC 160 Query 58 ATTCATGGGGTTGCTTAAGAAATTTAGTAAGAAGGAAACAAGTCGACTCTTCAAATGGCA 117 |||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 161 ATTCAT-GGGTTGTTTAAGAAGCTTAGTAAGAAGGAAACAATTCGACTCTTCAAATGGCA 219 Query 118 AAACAGAGA--C-TCATCATCACCAACAACTCGCAAAAGCTTTGACCTTTCCTCACTTGA 174 || |||||| | ||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct 220 AAGCAGAGACTCATCATCATCACCAACAGCTTGCAAAAGCGTTGACCTTTCCTCACTTGA 279 Query 175 TTGCCGTTGGTGTTGGATCAACAATAGGAGCAGGGGTTTATATTCTTGTGGGAACAGTGG 234 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 280 TTGCCATTGGTGTTGGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAACAGTAG 339 Query 235 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTTTCCTTCCTTATAGCTGGAATTTCTGCTG 294 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 340 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTTATAGCTGGAATTTCTGCTG 399 Query 295 CGCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCTTCAGCTGGGAGTGCCT 354 | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 400 CCCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCCTCTGCTGGGAGTGCCT 459 Query 355 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGTGCTGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 460 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGCGCTGA 519 Query 415 TTTTGGAATACACAATTGGTGGTTCAACAGTAGCTCGTGGCATATCTCCAAATCTGGCAA 474 ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| Sbjct 520 TTTTGGAATACACAATTGGTGGTTCAACAGTTGCCCGCGGCATATCTCCAAATCTGGCAA 579 Query 475 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 639 Query 535 TCGATATTGTTGTTGACCCATGTGCGGCTGTACTAGTGTTCATTGTAACAGGGCTCTTG- 593 | ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || ||| Sbjct 640 TTGATATTGTTGTTGACCCGTGTGCTGCTGTGCTAGTGTTCATTGTAACAGGACT-TTGT 698 Query 594 TGCCTTGGAGTAAAAGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 653 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 TGCCTTGGAGTAAAGGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 758 Query 654 GTCATGCTATTTGTCATAGTAGTTGGTAGTTATCTGTGTTTCAAGACTGGCTGGGTAGGT 713 |||||| ||||||||||||||| ||| || ||| ||||||||||||| || ||||| ||| Sbjct 759 GTCATGATATTTGTCATAGTAGCTGGAAGCTATTTGTGTTTCAAGACAGGTTGGGTTGGT 818 Query 714 TATGAACTTCCAACGGGGTATTTTCCGTATGGGGTTGATGGAATGCTTACTGGATCTGCT 773 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 819 TATGAACTTCCAACGGGGTATTTTCCTTACGGGGTTGATGGAATGCTTACTGGATCTGCT 878 Query 774 ACTGTCTTCTTTGCGTACATCGGGTTTGATTCAGTTTCAAGTATGGCAGAGGAGGTGAAA 833 |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 879 ACTGTCTTCTTTGCCTACATCGGGTTTGATACAGTTGCAAGTATGGCAGAGGAGGTGAAA 938 Query 834 AATCCCCAGCGGGATTTACCGCTCGGTATTGGTCTTTCGCTCATGCTTTGTTGTTTGCTA 893 ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 939 AATCCCCGGCGGGATTTACCGCTCGGTATTGGGATTTCGCTCCTGCTTTGTTGTTTGCTG 998 Query 894 TACATGATGGTCTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 953 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 TACATGATGGTGTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 1058 Query 954 ACTCCAATATCCTCTGCATTTGCTAGTCACGGAATTCAATGGGCCGCATATTTGATAACT 1013 ||||||||||| || |||||| ||||||| |||||||||||||| ||||||||||||| | Sbjct 1059 ACTCCAATATCATCCGCATTTTCTAGTCATGGAATTCAATGGGCTGCATATTTGATAAAT 1118 Query 1014 TTAGGTGCTGTCATGGCTCTCTGTTCTGTTTTAATGGGCTCCATTCTCCCTCAGCCGCGG 1073 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1119 TTAGGTGCTGTCATGGCTCTCTGTTCTGCATTAATGGGCTCCATTCTCCCTCAGCCGCGG 1178 Query 1074 ATTCTGATGGCAATGGCTAAGGATGGTCTCTTGCCTTCATTTTTCTCAAATGTGAATCAA 1133 ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| Sbjct 1179 ATTCTGATGGCAATGGCTAGGGATGGTCTCTTGCCTTCATATTTCTCATATGTGAATCAA 1238 Query 1134 CGCACGCAGGTTCCTGTTAATGGCACCATAACAACTGGTGTTTGTGTAGCAATCTTAGCT 1193 |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1239 CGCACGCAGGTTCCAATTAATGGCACCATAACCACTGGTGTTTGTGCAGCAATCTTAGCT 1298 Query 1194 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1299 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1358 Query 1254 ACAATGGTTGCAATATCA--G-TG-T--T--GATA----G----T-C--A-GA--TA--T 1289 |||||||||||||||||| | || | | |||| | | | | || || | Sbjct 1359 ACAATGGTTGCAATATCATTGTTGATAGTCAGATATGTTGTTCCTCCAGATGAGGTACCT 1418 Query 1290 GTT-CCTC--CAGAT-GAGAAAACTCATCCAGTCACGT-----CTTCCAGT-AGTAGTAA 1339 || |||| || | ||||||||||||||||||||| |||||| | ||||||| Sbjct 1419 CTTCCCTCATCACTTCAAGAAAACTCATCCAGTCACGTCGGAACTTCCA-TCCGTAGTAA 1477 Query 1340 ACAACCTTTACTTTGCAAAGCT-GATGCTTCAATTGTGGATAAGGAAAAAGCTCAAGGAG 1398 ||||||||||||| |||||| | |||| |||| |||| ||||||||||| |||| |||| Sbjct 1478 ACAACCTTTACTTGGCAAAG-TGGATGATTCAGTTGTCGATAAGGAAAATGCTCCAGGAA 1536 Query 1399 GTTGGGTTCTCAACAAAGAAAACAGAAGGAAACTTGCTGGTTGGAGCATTATGTTCACTT 1458 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1537 GTTGGGTTCTCAACAAAAAAAACAGACGGAAATTTGCTGGTTGGAGCATTATGTTCACTT 1596 Query 1459 GTACTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTAC 1518 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1597 GTATTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTCC 1656 Query 1519 GATACTCGCTATGTGGTGTTGGTGGATTGTTACTTCTTGTCGGTTTGATTGTTCTGAGTT 1578 |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1657 GATATTCTCTATGTGGTGTTGGTGGATTGTTCCTTCTTGTCGGTTTGATTGTTCTGATTT 1716 Query 1579 GCATAGATCAAGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1638 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1717 GCATAGATCAGGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1776 Query 1639 TTGTTCCGCTTTTGCCTATAGTCTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1698 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1777 TTGTTCCGCTTTTGCCTATAGTTTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1836 Query 1699 GAGCTGCGACATGGGCTCGTGTATCGGTTTGGCTGTTCATTGGAGTGCTTGTTTACATTT 1758 |||||||||| |||| |||||||||||||||||||||| | |||||| |||||||||||| Sbjct 1837 GAGCTGCGACGTGGGTTCGTGTATCGGTTTGGCTGTTCCTCGGAGTGGTTGTTTACATTT 1896 Query 1759 TCTATGGCCGAAGAAACAGCTCTCTTGTGAATGCAGTTTATGTCTCCACTGCTCATGTCC 1818 ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1897 TCTATGGGAGAAGAAACAGCTCTCTTGTGAATGCTGTTTATGTCTCCACTGCTCATCTCC 1956 Query 1819 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAACTCTACATGAAACCAT 1872 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1957 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAAGTCTACATGAAACCAT 2010 > AT1G58030.1 | Symbols: CAT2 | cationic amino acid transporter 2 | chr1:21464001-21468420 REVERSE LENGTH=2371 Length=2371 Score = 1133 bits (613), Expect = 0.0 Identities = 1112/1345 (83%), Gaps = 66/1345 (5%) Strand=Plus/Plus Query 8 TTTAAT-GGGTTTTATGGTGAATACGCAAAACGAAGATGGTA-GTGGTAACCATTCATGG 65 ||| || ||||||| ||||| |||||||||| | || || | |||| | ||||||||| Sbjct 276 TTTGATGGGGTTTT-TGGTGGATACGCAAAA-G--GAAGG-AGGTGG--A-CATTCATGG 327 Query 66 GGTTGC-TTAAGAAATTTAGTAAGAAGGAAACAAGTCGACTCTTCAAATGGCAAAACAGA 124 |||| | || |||| ||| || ||||||||||||||||||||| | |||||| || | Sbjct 328 GGTTACGTT-AGAAGTTTGGTTAGAAGGAAACAAGTCGACTCTGCTAATGGC----CA-A 381 Query 125 GACTCATCATCACCAACAACTCGCAAAAGCTTTGACCT-TTCCTCA-CTTGATTGCCGTT 182 ||||| ||| | ||||| || | ||| | | || ||||||| || | |||| || Sbjct 382 -TCTCATGGTCA-C--CAACTTGCTAGAGCCCTCA-CTGTTCCTCATCTCG-TTGCAATT 435 Query 183 GGTGTTGGATCAACAATAGGAGCAGGGGTTTATATTCTTGTGGGAACAGTGGCTAGAGAG 242 ||||||||| ||||||||||||| || |||||||||||||| |||||||| || |||||| Sbjct 436 GGTGTTGGAGCAACAATAGGAGCTGGAGTTTATATTCTTGTAGGAACAGTTGCGAGAGAG 495 Query 243 CATTCAGGACCTGCTCTTGCTTTTTCCTTCCTTATAGCTGGAATTTCTGCTGCG-CTTTC 301 |||||||||||| |||||||||| || || ||||| ||||||||| |||||| | ||||| Sbjct 496 CATTCAGGACCTTCTCTTGCTTTGTCTTTTCTTATTGCTGGAATTGCTGCTG-GTCTTTC 554 Query 302 TGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCTTCAGCTGGGAGTGCCTATCATTA 361 ||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||| || Sbjct 555 TGCGTTTTGTTATGCTGAACTCTCTAGTCGTTGCCCTTCAGCTGGGAGTGCGTATCACTA 614 Query 362 TTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGTGCTGATTTTGGA 421 |||||||||||| |||||||||||||||||||| | || || |||| | ||||| |||| Sbjct 615 TTCTTACATTTGTGTTGGTGAAGGTGTTGCGTGGATAATCGGTTGGGCGTTGATTCTGGA 674 Query 422 ATACACAATTGGTGGTTCAACAGTAGCTCGTGGCATATCTCCAAATCTGGCAATGATTTT 481 || || |||||||| ||| | || || ||||||||||| || ||||||||| ||||||| Sbjct 675 GTATACCATTGGTGGCTCAGCTGTTGCCCGTGGCATATCCCCTAATCTGGCACTGATTTT 734 Query 482 CGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCCTCGATAT 541 |||||||||||| || ||||| |||| ||||| || || || ||||||||||| ||||| Sbjct 735 TGGTGGTGAAGATGGTTTGCCTGCAATTTTAGCGCGCCACCAGATCCCAGGCCTTGATAT 794 Query 542 TGTTGTTGACCCATGTGCGGCTGTACTAGTGTTCATTGTAACAGGGCTCTTGTGCCTTGG 601 ||||||||| |||||||| ||| | || ||||| ||||||| || || |||||| | || Sbjct 795 TGTTGTTGATCCATGTGCTGCTATTCTTGTGTTTGTTGTAACTGGCCTTTTGTGCATGGG 854 Query 602 AGTAAAAGAGAGCACATTTGCTCAGGGAATTGTAACAACAG-CAAATGTCTTTGTCATGC 660 | |||| ||||||||||||||||||||||||||||| ||| ||| ||| | |||| || Sbjct 855 AATAAAGGAGAGCACATTTGCTCAGGGAATTGTAACTGCAGTCAA-TGTGTGTGTCCTGT 913 Query 661 TATTTGTCATAGTAGTTGGTAGTTATCT-GTGTTTCAAGACTGGCTGGG-TAGGTTATGA 718 ||||||||||||||| ||| |||||||| | | |||||||| || ||| | |||||||| Sbjct 914 TATTTGTCATAGTAGCTGGCAGTTATCTCG-GCTTCAAGACAGGTTGGCCT-GGTTATGA 971 Query 719 ACTTCCAACGGGGTAT-TTTCCGTATGGG-GTTGATGGAATGCTTACTGGATCTGCTACT 776 ||||||||| |||| | ||||| | | || || ||||||||| || |||| |||||||| Sbjct 972 ACTTCCAACAGGGT-TCTTTCCAT-TCGGAGTAGATGGAATGTTTGCTGGTTCTGCTACA 1029 Query 777 GTCTTCTTTGCGTACATCGGGTTTGATTCAGTTTCAAGTATGGCAGAGGAGGTGAAAAAT 836 ||||| ||||| | ||| ||||||||||| ||| |||||| ||||||||||||| |||| Sbjct 1030 GTCTTTTTTGCATTCATTGGGTTTGATTCGGTTGCAAGTACCGCAGAGGAGGTGAGAAAT 1089 Query 837 CCCCAGCGGGATTTACCGCTCGGTATTGGTCTTTCGCTCATGCTT-TGTTGTT-TGCTAT 894 ||||| |||||||||||| | |||||||||||| | ||| || || ||||||| | || | Sbjct 1090 CCCCAACGGGATTTACCGATTGGTATTGGTCTTGCTCTCTTG-TTATGTTGTTCT-CTCT 1147 Query 895 ACATGATGGTCTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGA-CCCTGAC 953 ||||||||||||| | ||||||||||||||| | || || ||||| ||||| ||| ||| Sbjct 1148 ACATGATGGTCTCCATAGTTATTGTTGGTTTAATTCCTTACTATGCAATGGATCCC-GAC 1206 Query 954 ACTCCAATATCCTCTGCATTTGCTAGTCACGGA-ATTCAATGGGCCGCATATTTGATAAC 1012 || || |||||||||||||| |||||||| | | || |||||||| | ||| || ||||| Sbjct 1207 ACCCCGATATCCTCTGCATTCGCTAGTCATG-ACATGCAATGGGCTGTATACTTAATAAC 1265 Query 1013 TTTAGGTGCTGTCATGGCTCTCTGTTCTGTTTTAATGGGCT-CCATTCTCCCTCAGCCGC 1071 |||||| ||||||||||| ||||| || | ||||||||| | || ||||||||||||| | Sbjct 1266 TTTAGGAGCTGTCATGGCACTCTGCTCAGCTTTAATGGG-TGCCCTTCTCCCTCAGCCAC 1324 Query 1072 GGATTCTGATGGCAATGGCTAAGGATGGTCT-CTTGCCTTC-ATTTTTCTCA-A-ATGTG 1127 | ||||||||||||||||||| ||||||||| || ||||| |||||| ||| | || | Sbjct 1325 GAATTCTGATGGCAATGGCTAGGGATGGTCTGCTC-CCTTCTATTTTT-TCAGACAT-T- 1380 Query 1128 AATCAACGCACGCAGGTTCCTGTTAATGGCACCA-TAACAACTGGTGTT-TGTG-TAGCA 1184 ||| ||||||| |||||||| ||||| | || || | ||||||| ||| |||| | ||| Sbjct 1381 AATAAACGCACACAGGTTCCGGTTAAAG-CAACAGTGGCAACTGG-GTTGTGTGCT-GCA 1437 Query 1185 ATCTTAGCTTTCTTTATGGATGTTTCGCAACTGGC-GGGAATGGTGAGTGTCGGGACACT 1243 | |||||| ||||||||||||||||| || || || |||| |||||||||| |||||||| Sbjct 1438 ACCTTAGCGTTCTTTATGGATGTTTCACAGCTTGCAGGGA-TGGTGAGTGTTGGGACACT 1496 Query 1244 TGTTGCATTTACAATGGTTGCAATATCAGTGTTGATAGTCAGATATGTTCCTCCAGATGA 1303 | | |||||||||||||| |||||||||||||||||| | |||||||||||||||||||| Sbjct 1497 TCTGGCATTTACAATGGTGGCAATATCAGTGTTGATACTAAGATATGTTCCTCCAGATGA 1556 Query 1304 GAAAACTCATCCAGTCA-CGTCTTC 1327 | || ||| ||| |||| | ||||| Sbjct 1557 GCAACCTCTTCC-GTCATC-TCTTC 1579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92871008250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5