BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947400 Length=2466 Score E Sequences producing significant alignments: (Bits) Value AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrog... 3698 0.0 AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomer... 222 1e-56 > AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897410-14900647 FORWARD LENGTH=2527 Length=2527 Score = 3698 bits (2002), Expect = 0.0 Identities = 2170/2253 (96%), Gaps = 4/2253 (0%) Strand=Plus/Plus Query 1 CGATACAGATCCACAACGCCATGGGTTTAGGCATCTTAGCTTCTCGAACAATTCGACCAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGATACAGATCCACAACGCCATGGGTTTAGGCATCTTAGCTTCTCGAACAATTCGACCAG 120 Query 61 CTTCTCGTCTTCTTCAATCACACAA-CTCCAATTTCTTCCTCCGCACCATCGTCTCCAAA 119 |||| |||||||||||||| || || ||||||||||||||||||||| |||||||| ||| Sbjct 121 CTTCACGTCTTCTTCAATCTCA-AACCTCCAATTTCTTCCTCCGCACAATCGTCTCAAAA 179 Query 120 CCAGAGCTCCAATCTCCTGAATCCGCTGCTGTCTCTGAGCCTGAGCCACCGACACAGATT 179 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 180 CCAGAGCTCCAATCTCCTGAATCCGCTGCTGTCTCTGAGCCTGAGCCGCCGACACAGATT 239 Query 180 CTCCCTCCTAGAAACCCTGTAGGTGGAGCACGCGTCCATTTCTCGAATCCTGAAGATGCG 239 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 240 CTCCCTCCTAGAAACCCTGTAGGTGGAGCACGCGTCCACTTCTCGAATCCTGAAGATGCG 299 Query 240 ATCGAGGT-TTTCGTTGATGGTTACGCGGTCAAAGTTCCTAAAGGATTCACTGTTCTTCA 298 |||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 300 ATCGAGGTCTTT-GTCGATGGTTACGCGGTCAAAGTCCCTAAAGGATTCACTGTTCTTCA 358 Query 299 GGCTTGTGAGGTCGCTGGAGTTGATATTCCAAGGTTTTGTTATCATTCTCGTTTGTCTAT 358 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 359 GGCTTGTGAGGTCGCTGGAGTTGATATCCCGAGGTTTTGTTATCATTCTCGTTTATCTAT 418 Query 359 TGCTGGAAATTGTAGGATGTGTCTTGTTGAAGTCGAGAAATCTCCTAAGCCTGTAGCGTC 418 |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 419 TGCTGGAAATTGCAGGATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTC 478 Query 419 TTGTGCCATGCCTGCACTTCCAGGGATGAAGATTAAGACTGACACACCGATAGCGAAGAA 478 |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 479 ATGTGCCATGCCTGCGCTTCCTGGGATGAAGATTAAGACTGATACACCGATAGCTAAGAA 538 Query 479 GGCGAGGGAGGGAGTGATGGAGTTTTTGTTGATGAATCATCCTTTAGATTGCCCTATTTG 538 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 539 GGCGAGGGAGGGAGTGATGGAGTTTTTGTTGATGAATCACCCTTTGGATTGTCCTATTTG 598 Query 539 TGATCAAGGAGGAGAGTGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGACAGAGG 598 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 599 TGACCAAGGAGGAGAGTGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGATAGAGG 658 Query 599 TCGTTTTACTGAGATGAAAAGATCTGTTGTTGATAAGAACCTTGGTCCTCTTGTGAAGAC 658 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 659 ACGTTTTACTGAGATGAAAAGATCTGTTGTTGATAAGAATCTTGGTCCTCTTGTGAAGAC 718 Query 659 TGTTATGACTCGGTGTATCCAGTGTACAAGGTGTGTACGATTTGCTTCAGAAGTTGCTGG 718 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 719 TGTTATGACTCGGTGTATCCAGTGTACAAGGTGTGTACGATTTGCTTCTGAAGTTGCTGG 778 Query 719 AGTTCAGGATCTTGGTATACTAGGTCGTGGTAGTGGAGAAGAAATTGGAACTTATGTTGA 778 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 779 GGTTCAGGATCTTGGTATACTAGGTCGTGGTAGTGGAGAGGAAATTGGAACTTATGTTGA 838 Query 779 AAAGCTTATGACCAGTGAACTCTCTGGAAATGTTATAGACATCTGTCCTGTTGGAGCCTT 838 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 839 AAAGCTTATGACCAGTGAACTCTCTGGAAATGTTATTGATATCTGTCCTGTTGGAGCCTT 898 Query 839 GACCTCAAAGCCCTTTGCCTTTAAAGCGAGAAACTGGGAGTTGAAAGCAACAGAAACCAT 898 |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 899 GACCTCAAAGCCTTTTGCCTTTAAAGCCAGAAACTGGGAGTTGAAAGCAACAGAAACTAT 958 Query 899 TGATGTTAGTGATGCTGTTGGGTCCAACATCCGCGTTGATAGTAGAGGACCAGAAGTGAT 958 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 959 TGATGTTAGTGATGCTGTTGGGTCCAACATCCGTGTTGATAGTAGAGGACCAGAAGTAAT 1018 Query 959 GCGTATCATTCCACGCCTTAATGAGGATATAAACGAAGAATGGATATCTGACAAAACCCG 1018 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GCGTATCATTCCACGCCTGAATGAGGATATAAACGAAGAATGGATATCTGACAAAACCCG 1078 Query 1019 ATTCTGTTATGACGGTTTGAAAAGACAAAGGTTGAGCGACCCTATGATCAGAGATTCCGA 1078 ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1079 ATTCTGTTATGACGGCCTGAAAAGACAAAGGCTGAGCGACCCTATGATCCGAGATTCCGA 1138 Query 1079 TGGACGATTCAAGGCAGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATTCA 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TGGACGATTCAAGGCAGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATTCA 1198 Query 1139 TCAGGTGAAACCAGATGAGATTGTTGGCGTAGCAGGTCAGCTATCTGATGCGGAATCCAT 1198 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1199 TCAGGTGAAGCCAGATGAGATTGTTGGAGTAGCAGGTCAGCTATCTGATGCGGAATCCAT 1258 Query 1199 GATGGTACTGAAGGACTTCGTTAACAGAATGGGTTCAGACAATGTCTGGTGTGAAGGAAC 1258 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1259 GATGGTACTGAAGGACTTCGTTAACAGAATGGGCTCAGACAATGTATGGTGTGAAGGAAC 1318 Query 1259 AGCTGCTGGTGTTGATGCTGATCTTAGGTATAGTTATCTGATGAACACTAGTATCAGTGG 1318 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 1319 AGCTGCTGGTGTTGATGCTGATCTTAGATACAGTTATCTGATGAACACTAGCATCAGTGG 1378 Query 1319 ACTTGAGAACGCCGATCTCTTCCTTCTAATTGGTACCCAGCCTAGGGTTGAAGCTGCAAT 1378 |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 1379 ACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGCCTAGGGTGGAAGCTGCAAT 1438 Query 1379 GGTGAATGCTAGGATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGGATATGTTGG 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 GGTGAATGCTAGGATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGGATATGTTGG 1498 Query 1439 TCCACCTGCAGAGTTCAACTACGACTGCAAACACCTCGGGACTGGGCCTGATACCCTCAA 1498 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1499 TCCACCTGCAGAGTTCAATTACGACTGCAAACACCTCGGGACTGGGCCTGATACTCTCAA 1558 Query 1499 GGAAATCGCTGAGGGACGACACCCATTCTGTGCGGCTCTCAAGAACGCCAAAAACCCTGC 1558 |||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||| Sbjct 1559 GGAAATTGCTGAGGGACGGCATCCATTCTGTACGGCTCTCAAGAACGCCAAAAACCCTGC 1618 Query 1559 AATCATTGTTGGTGCTGGGCTCTTCAACAGAACTGATAAAAATGCTATCCTCTCTTCTGT 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 AATCATTGTTGGTGCTGGGCTCTTCAACAGAACTGATAAAAATGCTATCCTCTCTTCTGT 1678 Query 1619 GGAATCCATCGCACAAGCCAACAATGTCGTCCGACCAGACTGGAACGGTCTCAACTTTCT 1678 ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1679 GGAGTCCATTGCACAAGCCAACAATGTTGTCCGACCAGACTGGAACGGTCTCAACTTTCT 1738 Query 1679 CCTTCAGTATGCTGCTCAAGCGGCTGCTCTTGATCTCGGTCTCATTCAACAGTCCGCCAA 1738 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1739 CCTTCAGTATGCTGCCCAAGCGGCTGCTCTTGATCTTGGTCTCATTCAACAGTCCGCCAA 1798 Query 1739 AGCCCTCGAGTCTGCAAAATTCGTCTACTTGATGGGAGCAGACGATGTAGATGTTGAGAA 1798 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1799 AGCCCTCGAGTCTGCAAAATTCGTCTACTTGATGGGAGCAGACGATGTAAATGTTGACAA 1858 Query 1799 GATTCCTAAAGACGCCTTCGTGGTTTACCAAGGACACCATGGAGACAAAGCGGTTTACCG 1858 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 GATTCCTAAAGACGCCTTTGTGGTTTACCAAGGACACCATGGAGACAAAGCGGTTTACCG 1918 Query 1859 TGCAAACGTAATTCTCCCTGCATCGGCCTTCACCGAGAAAGAAGGAACCTATGAAAATAC 1918 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1919 TGCAAACGTAATTCTCCCTGCATCGGCCTTCACTGAGAAAGAAGGAACCTATGAAAATAC 1978 Query 1919 TGAAGGATTTACCCAACAGACTGTTCCAGCTGTTCCAACAGTTGGTGATGCAAGAGATGA 1978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1979 TGAAGGATTTACCCAACAGACTGTTCCAGCTGTTCCAACAGTTGGTGATGCAAGAGATGA 2038 Query 1979 TTGGAAGATTGTGAGAGCCTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAAT 2038 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2039 CTGGAAGATTGTGAGAGCCTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAAT 2098 Query 2039 CGAAGGTGTTAGATCAAGAATCAAGAGTGTTGCACCAAATCTAGTCCACACAGATGAACG 2098 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 2099 CGAAGGTGTTAGATCAAGAATAAAGAGCGTTGCACCAAATCTAGTCCACACAGATGAGCG 2158 Query 2099 AGAGCCAGCTGCTTTTGGGCCTTCATTGAAACCCGAGTGCAAGGAGACAATGAGCGCAAC 2158 |||||||||||||||||||||||||||||| || |||||||||||| |||||||| |||| Sbjct 2159 AGAGCCAGCTGCTTTTGGGCCTTCATTGAAGCCTGAGTGCAAGGAGGCAATGAGCACAAC 2218 Query 2159 ACCATTCCAACCCGTGGTTGAGAATTTTTACATGACAAACTCGATCACAAGAGCATCAAA 2218 ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2219 ACCGTTCCAAACCGTGGTTGAGAACTTTTACATGACAAACTCGATCACAAGAGCATCAAA 2278 Query 2219 GATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2251 ||||||||||||||||||||||||||||||||| Sbjct 2279 GATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2311 Score = 211 bits (114), Expect = 2e-53 Identities = 119/121 (98%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 2347 ACCTTTTGTGTAAGCC-GAGTATCACTGTATCTCGGGTTTAGCTTGCGGTGAAATCTATA 2405 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2315 ACCTTTTGTTTAAGCCTGAGTATCACTGTATCTCGGGTTTAGCTTGCGGTGAAATCTATA 2374 Query 2406 AGCAATTTGCAATAAGCACATTGTTAGATTCAAAACTTTGCAGTGTTAATTGGATGCTTT 2465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2375 AGCAATTTGCAATAAGCACATTGTTAGATTCAAAACTTTGCAGTGTTAATTGGATGCTTT 2434 Query 2466 G 2466 | Sbjct 2435 G 2435 > AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomerase 3 | chr1:10297877-10300005 REVERSE LENGTH=1638 Length=1638 Score = 222 bits (120), Expect = 1e-56 Identities = 165/187 (88%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 2073 CCAAATCTAGTCCACACAGATGAACGAGAGCCAGCTGCTTTTGGGCCTTCATTGAAACCC 2132 ||||| |||||||||||||| || |||||| ||||||||||||| ||||| ||||| || Sbjct 1186 CCAAACCTAGTCCACACAGACGAGCGAGAGGCAGCTGCTTTTGGCCCTTCCTTGAAGCCA 1245 Query 2133 GAGTGCAAGGAGACAATGAG-CGCAACACCATTCCAACCCGTGGTTGAGAATTTTTACAT 2191 |||| ||| |||||||| || | ||||||| ||| ||||||||||||||||||||||||| Sbjct 1246 GAGTCCAATGAGACAAT-AGACACAACACCTTTCAAACCCGTGGTTGAGAATTTTTACAT 1304 Query 2192 GACAAACTCGATCACAAGAGCATCAAAGATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2251 ||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| | || Sbjct 1305 GACAAACTCAATCACAAGAGCCTCAAAGATCATGGCTCAGTGCAGTGCTTTGCTCCTCAA 1364 Query 2252 GAAGTGA 2258 ||||||| Sbjct 1365 GAAGTGA 1371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122357173977 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5