BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947410
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutam... 1954 0.0
AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone ... 942 0.0
> AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine
synthase clone R1 | chr5:14933336-14935841 REVERSE LENGTH=1494
Length=1494
Score = 1954 bits (1058), Expect = 0.0
Identities = 1130/1165 (97%), Gaps = 4/1165 (0%)
Strand=Plus/Plus
Query 1 ATCAAAACACGAGACAGATTTGATTCCATTTTTATTACTGTTACTATCATCCAAACCCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATCAAAACACGAGACAGATTTGATTCCATTTTTATTACTGTTACTATCATCCAAACCCTT 172
Query 61 GGTATTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACATC-A 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 173 GGTATTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGAC-TCCA 231
Query 120 CTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGATATGAGAAGCA 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 232 CTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCA 291
Query 180 AAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCTCAGCTACCAAAGTGGAACTATG 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 292 AAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACCAAAGTGGAACTATG 351
Query 240 ATGGTTCAAGCACTGGTCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAG 299
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGGTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAG 411
Query 300 CCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGTGATGCTTACA 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 412 CCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACA 471
Query 360 CTCCCGCGGGTGAACCAATCCCGACAAACAAAAGACACGCTGCGGCTAAGGTCTTTAGCC 419
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 472 CTCCCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGCA 531
Query 420 ACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAGTACACTTTACTTC 479
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 532 ACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCC 591
Query 480 AGAAAGATGTGAAGTGGCCAGTTGGTTGGCCTATTGGCGGTTATCCCGGCCCTCAGGGAC 539
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 592 AGAAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCCGGCCCTCAGGGAC 651
Query 540 CGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGGAGAGATGTTGTTGATTCTCACT 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 652 CGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACT 711
Query 600 ACAAGGCCTGCTTATACGCTGGTATCAACATTAGTGGTATCAATGGAGAAGTCATGCCGG 659
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 712 ACAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGG 771
Query 660 GTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCCGCTGATGAAATTTGGG 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 772 GTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGG 831
Query 720 TCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTGGTATCTTTCGACC 779
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 832 TCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACC 891
Query 780 CGAAACCGATTCCTGGTGACTGGAATGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 839
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 892 CGAAACCGATTCCCGGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 951
Query 840 CAATGAGGGAAGAAGGGGGTTACGAGATTATCAAGAAGGCAATCGATAAATTGGGACTGA 899
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 952 CAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGA 1011
Query 900 GACACAAAGAACACATTGCGGCTTACGGTGAAGGCAATGAGCGTCGTCTCACTGGACACC 959
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1012 GACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACC 1071
Query 960 ATGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1019
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1131
Query 1020 GTGTAGGACGTGACACCGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1079
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1191
Query 1080 CGAACATGGACCCTTACATTGTCACTTCCATGATTGCAGAGACCACAATCCTCTGGAATC 1139
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1192 CGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATC 1251
Query 1140 CTTGATGATCA--AGATCAAGAAAA 1162
||||||||||| ||||||||||||
Sbjct 1252 CTTGATGATCATCAGATCAAGAAAA 1276
> AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone
F11 | chr1:24655499-24657683 REVERSE LENGTH=1282
Length=1282
Score = 942 bits (510), Expect = 0.0
Identities = 710/807 (88%), Gaps = 12/807 (1%)
Strand=Plus/Plus
Query 344 ATGTGTGATGCTTACACTCCCGCGGGTGAACCAATCCCGACAAACAAAAGACACGCTGCG 403
|||||||||||||||||||| ||||| || |||||||| || ||||| |||| ||||||
Sbjct 461 ATGTGTGATGCTTACACTCCAGCGGGAGAGCCAATCCCTACTAACAAGCGACATGCTGCG 520
Query 404 GCTAAGGTCTTTAGC-CACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCA 462
||| || ||||| || ||||||||||| |||||||||||||||||||| || || ||
Sbjct 521 GCTGAGATCTTT-GCTAACCCTGATGTTATTGCTGAAGTGCCATGGTATGGAATCGAACA 579
Query 463 AGAGTACACTTTACTT-CAGAAAGATGTGAAGTGGCCAGTTGGTTGGCCTATTGGCGGTT 521
||| |||||||| || ||||| |||||||| ||||| |||| ||||| ||||| || |
Sbjct 580 AGAATACACTTT-GTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCT 638
Query 522 ATCCC-GGCCCTCAGGGACCGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGGAGA 580
|||| |||||||||||||| ||||| ||| |||||||||| |||||||||||||| |||
Sbjct 639 -TCCCTGGCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGA 697
Query 581 GATGTTGTTGATTCTCACTACAAGGCCTGC-TTATACGCTGGTATCAACATTAGTGGTAT 639
|| |||||||| |||||||||| |||| | || || ||||| |||||||| ||||| ||
Sbjct 698 GACATTGTTGATGCTCACTACAAAGCCT-CTTTGTATGCTGGAATCAACATCAGTGGGAT 756
Query 640 CAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTC 699
||||||||||||||||||||| || ||||||||||| ||||| ||| | || ||||||||
Sbjct 757 CAATGGAGAAGTCATGCCGGGACAATGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTC 816
Query 700 GGCCGCTGATGAAATTTGGGTCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGG 759
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AGCTGCTGATGAAATATGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGG 876
Query 760 TGTGGTGGTATCTTTCGACCCGAAACCGATTCCTGGTGACTGGAATGGTGCTGGTGCTCA 819
|||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 877 TGTGGTTGTATCTTTTGACCCAAAACCTATTCCTGGTGACTGGAATGGAGCTGGTGCTCA 936
Query 820 CTGCAACTACAGTACCAAGTCAATGAGGGAAGAAGGGGGTTACGAGATTATCAAGAAGGC 879
| ||| |||||||| || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 937 CACCAATTACAGTACTAAATCAATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGC 996
Query 880 AATCGATAA-ATTGGGAC-TGAGACACAAAGAACACATTGCGGCTTACGGTGAAGGCAAT 937
||||| || || || | |||||||||| ||||||||| | |||||||||||||| ||
Sbjct 997 GATCGAGAAGCTT-GG-CTTGAGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAAC 1054
Query 938 GAGCGTCGTCTCACTGGACACCATGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTT 997
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1055 GAGCGTCGTCTCACGGGACACCATGAAACTGCTGACATCAACACTTTCCTTTGGGGTGTT 1114
Query 998 GCGAACCGTGGAGCATCGATCCGTGTAGGACGTGACACCGAGAAAGAAGGGAAAGGATAC 1057
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1115 GCGAACCGTGGTGCATCGATCCGAGTAGGACGTGACACCGAGAAAGAAGGGAAGGGATAC 1174
Query 1058 TTTGAGGACAGGAGGCCAGCTTCGAACATGGACCCTTACATTGTCACTTCCATGATTGCA 1117
|||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1175 TTTGAGGATAGGAGGCCAGCTTCAAACATGGACCCTTACGTTGTTACTTCCATGATTGCA 1234
Query 1118 GAGACCACAATCCTCTGGAATCCTTGA 1144
||||| ||| |||||||||| ||||||
Sbjct 1235 GAGACTACACTCCTCTGGAACCCTTGA 1261
Score = 326 bits (176), Expect = 4e-88
Identities = 239/270 (89%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 72 CCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACATCACTGACAAA-ATC 130
||||||||||| || ||||||| | |||||| || ||||||||| || ||| ||| |||
Sbjct 162 CCATGAGTCTTCTTGCAGATCTTGTTAACCTTGACATCTCAGACAACAGTGA-AAAGATC 220
Query 131 ATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGATATGAGAAGCAAAGCCAGGACT 190
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 221 ATCGCTGAATACATATGGGTTGGTGGTTCTGGTATGGACATGAGAAGCAAAGCCAGGACT 280
Query 191 CTACCTGGACCAGTGACTGACCCTTCTCAGCTACCAAAGTGGAACTATGATGGTTCAAGC 250
|| |||||||| ||||| || || || | || |||||||||||||||||||||||||||
Sbjct 281 CTCCCTGGACCTGTGACCGATCCATCAAAACTTCCAAAGTGGAACTATGATGGTTCAAGC 340
Query 251 ACTGGTCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCATATTCAAG 310
|||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||
Sbjct 341 ACTGGTCAAGCTCCTGGTCAAGACAGTGAAGTGATCTTATACCCTCAAGCAATTTTCAAA 400
Query 311 GATCCTTTCCGTAGAGGAAACAACATTCTT 340
||||| ||||||||||| |||||||| |||
Sbjct 401 GATCCATTCCGTAGAGGCAACAACATCCTT 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5