BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947434
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32400.1 | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate recep... 1493 0.0
> AT2G32400.1 | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate receptor
5 | chr2:13752584-13756853 REVERSE LENGTH=3261
Length=3261
Score = 1493 bits (808), Expect = 0.0
Identities = 920/975 (94%), Gaps = 3/975 (0%)
Strand=Plus/Plus
Query 418 GGATGATTGCATATGATGCAGCTGTTGGGGATATTGCAATAGTCCCAAGCCGGTCCAAAT 477
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1992 GGATG-GTGTATATGATGCTGCTGTTGGGGATATTGCAATAGTCCCAAGCCGGTCCAAGT 2050
Query 478 TAGTGGATTTCTCGCAGCCATATGCTTCCACAGGCCTTGTGGTGGTGATTCCAGCTAACG 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 2051 TAGTGGATTTCTCGCAGCCATATGCTTCCACAGGCCTTGTAGTGGTGATTCCTGCTAATG 2110
Query 538 ATGACAATGCAACTTGGATCTTTCTGAGACCCTTCACCATCCGGTTATGGTGTGTTGTTC 597
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2111 ATGACAATGCGACTTGGATCTTTCTGAGACCCTTCACCAGCCGGTTATGGTGTGTTGTTC 2170
Query 598 TAGTTTCATTCTTGGTTATTGCCGTAGTCATCTGGATCCTCGAACATCGCATCAATGAAG 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 TAGTTTCATTCCTGGTTATTGCCGTAGTCATCTGGATCCTCGAACATCGCATCAATGAAG 2230
Query 658 ATTTCAGAGGGCCACCCCGAAGACAATTGACCACAATGATCTTATTCAGCTTCTCAACTC 717
|||||||||||||||||||||||||| | | ||||||| |||| ||||||||||||||||
Sbjct 2231 ATTTCAGAGGGCCACCCCGAAGACAACTCAGCACAATGCTCTTGTTCAGCTTCTCAACTC 2290
Query 718 TTTTCAAGAGAAACCAGGAAGATACGATAAGCAATCTAGCAAGACTAGTGATGATTGTAT 777
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2291 TTTTCAAGAGAAACCAGGAAGATACAATAAGTAATCTAGCAAGACTAGTGATGATTGTAT 2350
Query 778 GGCTCTTCCTATTGATGGTTCTAACTGCGAGCTACACAGCGAACCTCACCTCAATCCTCA 837
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2351 GGCTCTTCCTATTGATGGTTCTAACCGCGAGCTACACAGCGAACCTCACCTCAATCCTCA 2410
Query 838 CAGTTCAACAGCTTCCTTCTGCCATTACCGGCATCGACAGCTTGCGGGCAAGTGAATTGC 897
|||||||||||||||| ||||| |||||||| || || ||||||||||||||||| | |
Sbjct 2411 CAGTTCAACAGCTTCCCTCTGCTATTACCGGTATTGATAGCTTGCGGGCAAGTGAGGTAC 2470
Query 898 CTATCGGGTACCAGGCTGGGACATTCACATTAGAGTATTTAACCTACAGTCTTGGCATGG 957
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2471 CTATCGGGTACCAGGCTGGGACGTTCACTTTAGAGTATTTAACCTACAGTCTTGGCATGG 2530
Query 958 CTCGCTCTAGGCTAGTCCCACTTGACTCGACGGTAG-AGTATGAAAAGGCTCTAAAGCTA 1016
|||| ||||| || ||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 2531 CTCGGTCTAGACTGGTCCCACTTGACTCGACCG-AGGAGTATGAAAAGGCTCTAAAGCTG 2589
Query 1017 GGACCAACCAACTGGGGAGGTGTGGCTGCTATTGTCGACGAACTCCCTTACATCGAACTG 1076
|| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2590 GGGCCAACCAATTGGGGAGGTGTTGCTGCCATTGTCGACGAACTCCCTTACATCGAACTG 2649
Query 1077 TTTCTAGCAGAACGAACAGGCTTCAAGATTGTCGGAGAGCCCTTTATGCACCGTGGTTGG 1136
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2650 TTTCTAGCAGAACGAACAGGCTTCAAGATTGTTGGAGAACCCTTTATGCACCGTGGTTGG 2709
Query 1137 GGATTTGCGTTTAAGAGAGATTCTCCACTGGCTATAGACATGTCAACAGCTATCTTGAAA 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2710 GGATTTGCGTTTAAGAGAGATTCTCCATTGGCTATAGACATGTCAACAGCTATCTTGAAA 2769
Query 1197 CTCTCTGAGGCCAGGAAATTGCAAGAGATTCGAAAGAAATGGTTATGCAAGAAGAATTGC 1256
||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 2770 CTCTCTGAGACGAGGAAATTGCAAGAAATTCGAAAGAAATGGTTATGCAAGACGAATTGC 2829
Query 1257 GCAGAGAAATCAAATTGGAACCCAGAGCCAAACCAGCTTCATCTCAAGAGCTTCAAAGGG 1316
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2830 GCAGGGAAATCAAATTGGAACCCAGAGCCAAACCAGCTTCATCTCAAAAGCTTCAAAGGG 2889
Query 1317 TTGTACCTAGTCTGCATTGCAATCACAGTCTCTGCGTTTATAGTGTTTGTTCTCAGGATG 1376
||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2890 CTGTACCTTGTCTGCATTGCAATCACAGTCTCTGCGTTTTTGGTGTTTGTTCTCAGGATG 2949
Query 1377 ATACGCCAATTTGTG 1391
|||||||| || |||
Sbjct 2950 ATACGCCAGTTCGTG 2964
Score = 363 bits (196), Expect = 4e-99
Identities = 238/258 (92%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 170 CTCAGTAATTTTTGATATAGCGCAAAAGCTGCAGATGATGACCCATGAATACGTGTGGCT 229
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1114 CTCAG-AATTTTTGATATAGCGCAAAAGCTGCAGATGATGACCCATGAATACGTATGGCT 1172
Query 230 CGCCACAGACTGGCTCTCAGTTACTTTAGATTCTTCTTTAAGTGACAAAGGTGCTTTAAA 289
|||||||||||||||||| ||||| |||||||||| | | ||||||||||| || ||||
Sbjct 1173 CGCCACAGACTGGCTCTCTGTTACCTTAGATTCTT-TG-A-GTGACAAAGGTACTCTAAA 1229
Query 290 ACGTCTTGAAGGAGTAGTGGGGCTTCGTCAACACATCCCAGAATCCGCAAAGGTGCAACA 349
||| ||||||||||||||||||||||||||||| ||||||||||||| |||| || ||||
Sbjct 1230 ACGCCTTGAAGGAGTAGTGGGGCTTCGTCAACATATCCCAGAATCCGTAAAGATGGAACA 1289
Query 350 TTTCGCACAGAAACTGCAGAGCAAGAGATCAATGAATGCCTACGCATTCCATGCCTATGA 409
|||| | || |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1290 TTTCACGCATAAACTGCAGAGCAACAGATCAATGAATGCCTACGCATTACATGCCTATGA 1349
Query 410 TACAGTGTGGATGATTGC 427
||||||||||||||||||
Sbjct 1350 TACAGTGTGGATGATTGC 1367
Score = 296 bits (160), Expect = 4e-79
Identities = 170/175 (97%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 CACCTAATGATGCCCACCAAATGTCTGCCCTTGTGGATCTTATCGATTTTTATGGTTGGA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 845 CACCTAATGATGCCCACCAAATGTCTGCCCTTGTGGATCTTATCAATTTTTATGGATGGA 904
Query 61 AAGAGGTGATATCAGTTTACTCAGATGATGAGCTCGGAAGAAATGGAGTTTCTGCTCTAG 120
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 905 AAGAAGTGATCTCAGTTTACTCGGATGATGAGCTCGGAAGAAATGGAGTTTCTGCTCTAG 964
Query 121 ATGATGAACTGTACAAGAAAAGATCCAGAATTTCCTATAAAGTGCCGCTCTCAGT 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 ATGATGAACTGTACAAGAAAAGATCCAGAATTTCCTATAAAGTGCCGCTCTCAGT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5