BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947562
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41580.1 | Symbols: | RING/U-box superfamily protein | chr5... 3640 0.0
AT1G08910.1 | Symbols: | zinc ion binding;zinc ion binding | c... 281 2e-74
> AT5G41580.1 | Symbols: | RING/U-box superfamily protein | chr5:16626337-16630783
REVERSE LENGTH=2633
Length=2633
Score = 3640 bits (1971), Expect = 0.0
Identities = 2192/2299 (95%), Gaps = 14/2299 (1%)
Strand=Plus/Plus
Query 34 CGGTGGCTGGAACTGGCTTACGGGAGAAGACGGCAGCGTCACTGGTCAATTCCTTCCGAT 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CGGTGGCTGGAACTGGCTTACGGGAGAAGACGGCAGCGTCACTGGTCAATTCCTTCCGAT 209
Query 94 TAGCGTCGGTCACTCAACGTTTACGTTACCACATTCAA-ACCGGAGCTAAGGGTGATGCT 152
|||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||| ||
Sbjct 210 TAGCGTCGGTGACTCAACGTTTACGTTACCACATTCAAGA-CGGAGCTAAGGTTGATCCT 268
Query 153 AAGGAGTTTCAGATCTGTTGCATCTCTTTCGCTAAAGGCATTGATTTTGCTATAGCGAAT 212
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AAGGAGTTTCAAATCTGTTGCATCTCTTTCGCTAAAGGCATTGATTTTGCTATAGCGAAT 328
Query 213 AATGATATTCCTAAGAAGGTTGAGGAGTTTCCCTGGTTGCTCAAACAGGTGTGTC-GACA 271
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||| | ||||
Sbjct 329 AATGATATTCCTAAGAAGGTTGAGGAGTTTCCGTGGTTACTCAAACAGTTGTG-CAGACA 387
Query 272 TGGAACTGATGTGTACACTAAGACGGCGGTTATGGTGCTGATGATCTCTGTTAAGCATGC 331
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 388 TGGAACTGATGTGTACACTAAGACGGCGCTTATGGTGCTGATGATCTCTGTTAAGCATGC 447
Query 332 TTGTCATTTGGGATGGTTTTCGGATAGAGAGAGTCAAGAACTTATCGCTCTGGCTGATGA 391
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 448 TTGTCATTTGGGATGGTTTTCGGATAGCGAGAGTCAAGAACTTATCGCTCTAGCTGATGA 507
Query 392 GATAAGGACTTGTTTTGGGAGTTCTGGAAGCACTAGCCCTGGTATCAATTGTCCTGGCAG 451
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 508 GATAAGGACTTGTTTTGGGAGTTCTGGAAGCACTAGCCCTGGTATCAAAAGTCCTGGCAG 567
Query 452 TACATTTTCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGT 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TACATTTTCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGT 627
Query 512 TTCTTTTGAAGTGAAGGCTGGCTATACAATGCTGGCGCATGATTTTCATATCTCAAAGAC 571
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 628 TTCTTTTGAAGTGAAGGCTGGCTATACAATGCTGGCGCATGATTTTTATATCTCAAAGAA 687
Query 572 TATGCCACACTCGCTCCAAGAGAAAATTCGGTTATTTGTTGCCCAGACAGACAACATAGA 631
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TATGCCACATTCACTCCAAGAGAAAATTCGGTTATTTGTTGCCCAGACAGACAACATAGA 747
Query 632 CACGTCTGCCTGTATTTCAAATCCTCCAGAAGTCAGCTTCCTGCTAAATGGAAAGGGGGT 691
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 748 CACGTCTGCCTGTATTTCAAATCCTCCAGAAGTCAGCTTCTTGCTAAATGGAAAGGGGGT 807
Query 692 TGAGAAGAGAGTTAATATTGCAATGGATACAGGGCCTCAACTCCCTACAAATGTTACTGC 751
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TGAGAAGAGAGTCAATATCGCAATGGATACAGGGCCTCAACTCCCTACAAATGTTACTGC 867
Query 752 ACAGCTGAAATACGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACAT 811
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 ACAGCTGAAATATGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACAT 927
Query 812 CATCATAATTGCTTTTACGGGACTGGTACTGCCGCCTGAAAAACCAGTTCTTAAAGATTA 871
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 928 CATCATAATTGCTTTTACGGGACTGGTAGTGCCACCTGAAAAACCGGTTCTTAAAGATTA 987
Query 872 CCTTCAGTCTGGAGTCATTGAATCAAGTCCAGATTCAGACATCATTGAGGGGCCATCACG 931
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 988 CCTTCAGTCCGGAGTCATTGAAGCAAGTCCAGATTCAGACATCATTGAGGGGCCATCACG 1047
Query 932 AGTATCTCTCAATTGTCCTATAAGTCGCAAGCGGATCAAGCTTCCAGTCAAGGGCCAGTT 991
||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1048 AGTATCTCTCAGTTGCCCTATAAGTCGCAAGCGGATCAAGCTACCAGTCAAGGGCCAGTT 1107
Query 992 ATGTAAACATCTTCAGTGTTTTGATTTCTCAAATTATGTCCACATAAATATGAGAAACCC 1051
||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 1108 ATGTAAACATCTTCAGTGTTTTGATTTCTCAAACTACGTTCACATAAATATGAGGAACCC 1167
Query 1052 ATCCTGGCGCTGCCCGCATTGCAATCAACCTGTTTGCTACCCCGACATTCGTTTAGATCA 1111
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1168 AACCTGGCGCTGCCCGCATTGCAATCAACCTGTTTGCTACCCTGACATTCGTTTAGATCA 1227
Query 1112 AAACATGGCCAAGATATTAAAAGATGTGGAATATAATGCTGCTGCTGTAATCATCGATGC 1171
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1228 AAACATGGCCAAGATATTAAAAGATGTGGAACACAATGCTGCTGATGTAATCATCGATGC 1287
Query 1172 TGATGGTACATGGAAGGTTACAAAGAAA-ACTGGCGAGACCCCGGAACCTGTGCGTGAGA 1230
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1288 TGGTGGTACATGGAAGGTTACAAA-AAATACTGGCGAGACCCCGGAACCTGTGCGTGAGA 1346
Query 1231 TCATTCATGATCTAGAAGACCCAATGAGCTTGTTAAACTCTGGTCCAGTTGTTTTGGATC 1290
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 1347 TCATTCATGATCTAGAAGACCCGATGAGCTTATTAAACTCTGGTCCTGTTGTTTTCGATC 1406
Query 1291 TTACGGGGGATGATGATGCTGAAATGGAAGTTTTTGGTAACAACAAGATTGAGGACCGGA 1350
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1407 TTACGGGGGATGATGATGCTGAACTGGAAGTTTTTGGTGACAACAAGGTTGAGGACCGGA 1466
Query 1351 AGCCCTGTATGTCTGATGCTCAGGGTCAATCTAATAATAACAACACAAATAAAGATGCTT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1467 AGCCCTGTATGTCTGATGCTCAGGGTCAATCTAATAATAACAACACAAATAAACATCCTT 1526
Query 1411 CAAACGATGATTACTGTTCGATATTCGATATCTCTGATGTGATCGCATTTGACCCAGTGA 1470
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 1527 CAAACGATGATTACTCTTCGATATTTGATATCTCTGATGTGATCGCACTTGACCCGGAGA 1586
Query 1471 TATTATCTGCTTTGGGAAACACTGCGCCACAACCGCATCAAGCTTTGAATACTGGAACTG 1530
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1587 TTTTATCTGCTTTGGGAAACACTGCGCCACAACCGCATCAAGCTTCGAATACTGGAACTG 1646
Query 1531 GTCAACAATACTCCAACTTATCCCAAATACCAATGTCCATAGATCCAATGCAGGTACCTG 1590
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1647 GTCAACAATATTCAAACTTATCCCAAATACCAATGTCCATAGATCCAATGCCGGTACCTG 1706
Query 1591 TGCCATTCTCGCAGACACCATCTCCAAGAGATAGACCAGCAACTACTTCCACTGTCTTCA 1650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 TACCATTCTCGCAGACACCATCTCCAAGAGATAGACCAGCAACTACTTCCACTGTCTTCA 1766
Query 1651 CCATACCGAATCCCTCTCCACAATTCTCTCAGGTTCATGCTTCACCTGTTACGCCCACCG 1710
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1767 CCATACCGAATCCCTCTCCACAATACTCTCAGGTTCATGCTTCACCTGTTACACCCACCG 1826
Query 1711 GGACATATCTTGGTAGAACCTCTAGTCCGAGATGGAACCAGACTTATTCA-TCTCAAGCG 1769
| |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1827 GAACATATCTTGGTAGAACCACTAGTCCGAGATGGAACCAGACTTAT-CAATCTCAAGCG 1885
Query 1770 CCATCAATGACAACTCCATATACGAGCCGGAGGGTCCCAGTTCCAGTAACGAGCCAGTCG 1829
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1886 CCACCAATGACAACTCCATATACGAGCCGGAAGGTCTCAGTTCCAGTAACGAGCCAGTCG 1945
Query 1830 GCAGTGAATGTATCGC-CTTATGTTCAGTCTCAGCATGTCCCTAGAGTACTCAGCCAGCC 1888
||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1946 CCAGCGAATGTATC-CTCTTTTGTTCAGTCTCAGCATGTCCCTAGAGTACTCAGCCAGCC 2004
Query 1889 TAATAGTTATGGCATCAGAGGTCTAACCAGTAGCCATGCAAGCACT-CAAAGGCAGCACC 1947
||||| ||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 2005 TAATAATTATGGCGTCAGAGGTTTAACCAGTAGCCATGCAAGCACTTCAA-GGCAGCACC 2063
Query 1948 CAACTGGTCCCACTGTTCAATCTGTTTCTCGAACCAGTGACCTAATGGATGTAGACTTGA 2007
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2064 CAAGTGGTCCCACTGTTCAATCTGTTTCTCGATTAAGTGACCTAGTGGATGTAGACTTGA 2123
Query 2008 CCGTTCCTGATACATCCAACTGGCGCCCAAGGATGCGAGGCAGTCTTGGGTCCGGTTCTC 2067
| |||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||
Sbjct 2124 CGGTTCCTGATACATCCAACTGGCGCCCGAGGATGCGAGGAAGTCTTGTGCCCGGTTCTC 2183
Query 2068 ATTCCACTGCTCTTGACCACATGATAATCCGACCTACCCAACAGTCTCAAACTTCCACAA 2127
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 2184 ATTCCACTGCTCTTGACCACATGATCATCCGACCTAGCCAACAGTCTCAAACTTCCACTA 2243
Query 2128 GGCTTAACAGTTCACAGCCGGTTCAGACACCATCGGTTCAAACGTCTCAAGCTCAGTCAC 2187
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 GGCTGAATAGTTCACAGCCGGTTCAGACACCATCGGTTCAAACGTCTCAAGCTCAGTCAC 2303
Query 2188 CTTTTTCAACGGCTGCCTATAGAACCGAGACAGTTTTAGGAAACCAAAACAATCCGGTGC 2247
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2304 CTTTTACAACGGCTGCCTATAGAACCGAGACAGTTTTAGGAAACCGAAACCATCCGGTGC 2363
Query 2248 CCGCACCTCCTGGC-TCTGTAAGGCCTACTGGACCGACATCTTCATGGAGAACTTGAGAG 2306
|||| ||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2364 CCGCTCCTCCTGGCAT-TGTTAGGCCTACTGGACCGACATCTTGATGGAGAACTTGAGAG 2422
Query 2307 GCTAGAACAAGGAGAAGTT 2325
|||||||||||| ||||||
Sbjct 2423 GCTAGAACAAGGGGAAGTT 2441
> AT1G08910.1 | Symbols: | zinc ion binding;zinc ion binding |
chr1:2856227-2861170 FORWARD LENGTH=2844
Length=2844
Score = 281 bits (152), Expect = 2e-74
Identities = 603/811 (74%), Gaps = 69/811 (9%)
Strand=Plus/Plus
Query 295 CGGCGGTTATGGTGCTGATGATCTCTGTTAAGCA-TGCTTGTCA-TTTGGGATGGTTTTC 352
||| ||| |||| |||||||||||| || ||| | ||||||||| || |||||||| |
Sbjct 197 CGGTGGTAATGGCGCTGATGATCTCAGTCAAG-AGTGCTTGTCAGCTT-GGATGGTTCCC 254
Query 353 GGATAGAGAGAGTCAAGAACTT-ATCGCTCTGGC-T-GA-TGAGATAAGGACTTGTTTTG 408
||| ||||||| ||||||| || | ||| | | | || | ||| ||| | ||||
Sbjct 255 GGAGAGAGAGACTCAAGAA-TTGTTGGCTAT--CATAGACT-TGATGTGGAATGGTTTCA 310
Query 409 GGAGTTCTGGAAGCA-CT-AGCC-CTGGTATCAATTGTCCTGGCAGTAC-ATTTTCGCAG 464
| || || ||| | | | || || || | ||| |||| | || | | | | ||||||
Sbjct 311 GCTGTCCT-GAA-AATGTCA-CCTCTTGTGTAAATAGTCCCGTCACT-CTAATATCGCAG 366
Query 465 ATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGTTTCTTTTGAAG-T 523
|||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||||| |
Sbjct 367 GTCATTGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTTGAAGCT 426
Query 524 GAAGGCTGGCTAT-ACA-ATGCTGGCGCATGATTTTCATATCTCAAAGACTATGCCACAC 581
|| || | || | | ||| || | | || || ||||| ||||||| ||||||||
Sbjct 427 -AA-GCCAG-AATCAAAGATGATGATGAAGGACTTCCATATTTCAAAGAAGATGCCACAT 483
Query 582 TCGCTCC-AAGAGAAAATTCGG-TTATTTGTTGCCCAGACAGACAACAT-AGACACG-TC 637
|| | || || ||||| || || |||||||||| | |||||| |||| || || | ||
Sbjct 484 TCTC-CCAAACAGAAAGTT-GGATTATTTGTTGTTCGGACAGAGGACATAAG-CA-GATC 539
Query 638 TGCCTGTATT-TCAAATCCTCCAGAAGTCAGCTTCCTGCTAAATGGAAAGGGGGTTGAGA 696
| |||||| | | |||| | || ||||||||| || | ||||||||||| |||| |
Sbjct 540 TAATTGTATTGT-ACATCCACAAGGAGTCAGCTTTTTGTTGAATGGAAAGGGCATTGACA 598
Query 697 AGAGAGTTAATAT-TGCAATGGA-TACAGGGCCTCAACTCCCTACAAATGTTACTGCACA 754
|||||||||| || | ||||||| | | ||||| || || || || ||||||||||| |
Sbjct 599 AGAGAGTTAACATCT-CAATGGAGT-CTGGGCCGCAGCTTCCAACTAATGTTACTGCCCT 656
Query 755 GCTGAAATAC--GGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACATC 812
||| ||| | || | |||||||| |||| || || |||| ||| | |||| |
Sbjct 657 GCT-AAA-CCTTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTGGAGGTAGTTACTTG 714
Query 813 A-T-CATAATTGCTTTTACGGGACTG--GTACTGCCGCCTGAA-AAACCAGTT-CTTAAA 866
| | | | |||||||| | ||| || ||| | ||| || ||||| ||| || |||
Sbjct 715 ATTGC-T-ATTGCTTTCA-TGGA-TGTCATACCACTGCC-CAACAAACC-GTTACTGAAA 768
Query 867 GATTACCTTCAGT-CTGGAGTCATTGAATC-AAGTCCAGATTCAGACATCATTGAGGGGC 924
||||| |||| | ||| |||| ||| ||| || | |||||| ||||| ||||||||||
Sbjct 769 GATTATGTTCA-TCCTGAAGTCGTTGGATCAAACT-CAGATTGTGACATAATTGAGGGGC 826
Query 925 CATC-ACGAGTATCTCTCAATTGTCCTATAAGTCGCAA-GCGGATCAAGCTTCCAGTCAA 982
|||| | || ||||||||| ||||||||| || || || ||| ||||| ||||| || ||
Sbjct 827 CATCGAGGA-TATCTCTCAGTTGTCCTATCAGCCG-AACGCGTATCAAACTTCCTGTGAA 884
Query 983 GGGCCAGT-TATGTAAACATCTTCAGTGTTTTGATTTCTCAAATTATGTCCACATAAATA 1041
||| || | | |||||||||||||||||||||||||||| ||||||||| |||| || |
Sbjct 885 GGGTCA-TGTCTGTAAACATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAACA 943
Query 1042 TGAGAA-ACCCATCCTGGCGCTGCCCGCATT 1071
||| || ||| ||||||||||||||||
Sbjct 944 CAAGACGAC--ATCATGGCGCTGCCCGCATT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5