BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947661 Length=854 Score E Sequences producing significant alignments: (Bits) Value AT5G40800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1277 0.0 > AT5G40800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16334810-16335628 REVERSE LENGTH=819 Length=819 Score = 1277 bits (691), Expect = 0.0 Identities = 778/819 (95%), Gaps = 9/819 (1%) Strand=Plus/Plus Query 24 ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG 60 Query 84 ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCCAAGCCGACAACTACT 143 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 61 ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCAAAGCCGACGACTACT 120 Query 144 GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACTAAGAGAAAGTACGTTAGG 203 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACGAAGAGAAAGTACGTTAGG 180 Query 204 GTTTCCAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA 263 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTTTCAAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA 240 Query 264 ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTGCCGGAGAGATCT 323 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTACCGGAGAGATCT 300 Query 324 ACGCCGTTGAGTTTGGATCATAATAATCTCGATCCAACGGTGGAAACGATAACCGGAGAT 383 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 ACGCCGTTGAGTTTAGATCATAATAATCTCGATCCAACGGTGGAAACGATAAACGGAGAT 360 Query 384 GAAAC--------C-GACATGTGGCTCAAGTTTAACGGCGTTGATGACGTGGTGTATCCG 434 ||||| | |||| |||||||||||||||||||| |||||||| | || | | Sbjct 361 GAAACTTGTAATACCGACACGTGGCTCAAGTTTAACGGCGGTGATGACGCGTTGCAACAA 420 Query 435 GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACGGTGGCTCGGTTTCCCATGCG 494 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 421 GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACAGTGGCTTGGTTTCCCATGCG 480 Query 495 GCAGGGTTGACGGACGAAGAGATGGCGGATGCTTTAGATAAAGACACGTGTCCTGGTTTC 554 | |||||| |||||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 481 GTAGGGTTAACGGACGAAGAGCTCACATATGCTTTAGATAAAGACACGTGTCCTGGTTTC 540 Query 555 ATATCGGATGGTAGGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC 614 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATATCGGATGGTTCGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC 600 Query 615 GGAGACGGCGGATTCGGAAGAGAGGTGATTGTGTGGTTGGTGGTTGACCAAACGGCGACG 674 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 601 GGAGACGGCGGATTCGGAAGAGAGGTGATAGTGTGGTTGGTGGTTGACCAAACGGCGACG 660 Query 675 TTTTATGACTACCGAACTTTTACTTGTAAGGTGAGACTGGAATACACGTGGCGAGAGACG 734 |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| Sbjct 661 TTTTGTGACTACCGAACTTTTACGTGTAAGGTGAGAATGGAATACACGTGGCGAGAAACG 720 Query 735 AAGTACACTAAAACGGTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG 794 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AAGTACACTAAAACGTTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG 780 Query 795 AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA 833 ||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA 819 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41644107863 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5