BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947661

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40800.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1277    0.0  


> AT5G40800.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G27250.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:16334810-16335628 REVERSE LENGTH=819
Length=819

 Score = 1277 bits (691),  Expect = 0.0
 Identities = 778/819 (95%), Gaps = 9/819 (1%)
 Strand=Plus/Plus

Query  24   ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCAAGATCATGAGTTATGGCGGACGCTAAGATGCGCCGGTAAAGCGCAAGATAAG  60

Query  84   ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCCAAGCCGACAACTACT  143
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  61   ACCTCTGTTGATACTCTCATGCTTAAGTACCGTCCGATCGCTCCAAAGCCGACGACTACT  120

Query  144  GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACTAAGAGAAAGTACGTTAGG  203
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  GGTCAACCATTGGTCGGAGATACAAGTAGCACGAGAAGGACGAAGAGAAAGTACGTTAGG  180

Query  204  GTTTCCAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA  263
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTTTCAAAGAATAATAAAGCCACGTGTCGATCAAAGACGAACGGCTTCAGATCTAGCTCA  240

Query  264  ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTGCCGGAGAGATCT  323
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  ACAGATCCGGAGAATGGTCGGGAAGATATCGTCACGCTACAGCTCTTACCGGAGAGATCT  300

Query  324  ACGCCGTTGAGTTTGGATCATAATAATCTCGATCCAACGGTGGAAACGATAACCGGAGAT  383
            |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  301  ACGCCGTTGAGTTTAGATCATAATAATCTCGATCCAACGGTGGAAACGATAAACGGAGAT  360

Query  384  GAAAC--------C-GACATGTGGCTCAAGTTTAACGGCGTTGATGACGTGGTGTATCCG  434
            |||||        | |||| |||||||||||||||||||| |||||||| | || | |  
Sbjct  361  GAAACTTGTAATACCGACACGTGGCTCAAGTTTAACGGCGGTGATGACGCGTTGCAACAA  420

Query  435  GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACGGTGGCTCGGTTTCCCATGCG  494
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  421  GTTCCGGTAGAGACGTGGGTGACGGTGGAGTCCGTTAACAGTGGCTTGGTTTCCCATGCG  480

Query  495  GCAGGGTTGACGGACGAAGAGATGGCGGATGCTTTAGATAAAGACACGTGTCCTGGTTTC  554
            | |||||| |||||||||||| |  |  ||||||||||||||||||||||||||||||||
Sbjct  481  GTAGGGTTAACGGACGAAGAGCTCACATATGCTTTAGATAAAGACACGTGTCCTGGTTTC  540

Query  555  ATATCGGATGGTAGGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC  614
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  ATATCGGATGGTTCGAACCGTGTGGTGATGGTTAACGAGGCTTACCGGAGGATAGTAACC  600

Query  615  GGAGACGGCGGATTCGGAAGAGAGGTGATTGTGTGGTTGGTGGTTGACCAAACGGCGACG  674
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  601  GGAGACGGCGGATTCGGAAGAGAGGTGATAGTGTGGTTGGTGGTTGACCAAACGGCGACG  660

Query  675  TTTTATGACTACCGAACTTTTACTTGTAAGGTGAGACTGGAATACACGTGGCGAGAGACG  734
            |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct  661  TTTTGTGACTACCGAACTTTTACGTGTAAGGTGAGAATGGAATACACGTGGCGAGAAACG  720

Query  735  AAGTACACTAAAACGGTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG  794
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  AAGTACACTAAAACGTTGCCGTGTGATGTGTGGAAGATGGAGTTTGGTGGATTTGCATGG  780

Query  795  AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA  833
            |||||||||||||||||||||||||||||||||||||||
Sbjct  781  AGGTTGGATACTACTGCAGCTTTAACTCTTTGGCTTTGA  819



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41644107863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5