BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947663
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40780.1 | Symbols: LHT1 | lysine histidine transporter 1 | ... 2239 0.0
AT1G24400.1 | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine t... 475 4e-133
> AT5G40780.1 | Symbols: LHT1 | lysine histidine transporter 1
| chr5:16323651-16327281 FORWARD LENGTH=1712
Length=1712
Score = 2239 bits (1212), Expect = 0.0
Identities = 1334/1393 (96%), Gaps = 7/1393 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctcACAATCC-CTCACCATGGTAGCTCAAGCCCCTCATGATGATCTT 59
|||||||||||| ||| ||| || |||||||||||||||||||| ||||||||||||| |
Sbjct 144 TCTCTCTCTCTCCCTCTCAA-CCTCTCACCATGGTAGCTCAAGCTCCTCATGATGATCAT 202
Query 60 CAGGATGATGAGAAATTAGCAGCA---AGACAAAAGGAGATCGATGATTGGTTACCAATT 116
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 203 CAGGATGATGAGAAATTAGCAGCAGCGAGACAAAAAGAGATCGAAGATTGGTTACCAATT 262
Query 117 ACTTCATCAAGAAATGCTAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 322
Query 177 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCAGGAATT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCGGGAATT 382
Query 237 GCAGTGTTGGTTCTATCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 296
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GCAGTGTTGGTTTTGTCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 442
Query 297 CATGAAATGGTTCCTGGGAAGCGTTTTGATCGTTACCATGAGCTTGGACAACACGCGTTT 356
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 443 CATGAAATGGTTCCTGGAAAGCGTTTTGATCGTTACCATGAGCTCGGACAACACGCGTTT 502
Query 357 GGAGAGAAGCTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 416
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGAGAAAAACTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 562
Query 417 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 622
Query 477 GACGATTGTAAACCAATCAAACTTACTTATTTCATCATGATCTTTGCTTCTGTTCACTTC 536
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 623 GATGATTGTAAACCAATCAAGCTTACTTATTTCATCATGATCTTTGCTTCGGTTCACTTC 682
Query 537 GTCCTCTCTCATCTTCCCAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GTCCTCTCTCATCTTCCTAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 742
Query 597 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGCGTTCAAGAA 656
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 743 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAA 802
Query 657 GACGTTCAATACGGTTATAAAGCGAAAACAACAGCCGGTACAGTTTTCAATTTCTTCAGC 716
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 803 GACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAATTTCTTCAGC 862
Query 717 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 922
Query 777 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 982
Query 837 GCTTATATCGTCGTTGCGCTCTGTTATTTCCCTGTGGCTCTAGTCGGATATTATATTTTC 896
||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||
Sbjct 983 GCTTACATCGTCGTAGCGCTCTGTTATTTCCCCGTGGCTCTCGTTGGATACTACATTTTC 1042
Query 897 GGGAACGGAGTGGAAGATAACATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCG 956
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GGGAACGGAGTCGAAGATAATATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCC 1102
Query 957 ACAGCGAACATCTTCGTCGTGATCCATGTCATCGGTAGTTACCAGATATATGCAATGCCG 1016
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1103 ACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCG 1162
Query 1017 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1222
Query 1077 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACCTTT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1223 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACGTTT 1282
Query 1137 CCGTTCTTCGGAGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCTCCAACCACATAC 1196
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1283 CCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATAC 1342
Query 1197 TTCCTCCCTTGCATCATTTGGTTAGCCATCTACAAACCCAAAAAATTCGGCTTGTCTTGG 1256
|||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 1343 TTCCTCCCTTGCGTCATTTGGTTAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGG 1402
Query 1257 TGGGCCAACTGGGTTTGTATCGTGTTCGGTCTTTTCCTAATGGTTCTATCACCGATTGGA 1316
|||||||||||||| || |||||||| ||||||||| | ||||| ||||| || ||||||
Sbjct 1403 TGGGCCAACTGGGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGA 1462
Query 1317 GGTCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCGTAAATGCAATGT 1376
|| |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1463 GGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAACGCTATGT 1522
Query 1377 AATATC-ACTAAT 1388
||| || ||||||
Sbjct 1523 AAT-TCCACTAAT 1534
> AT1G24400.1 | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine
transporter 2 | chr1:8651407-8653828 REVERSE LENGTH=1749
Length=1749
Score = 475 bits (257), Expect = 4e-133
Identities = 871/1159 (75%), Gaps = 76/1159 (7%)
Strand=Plus/Plus
Query 97 TCGATGATTGGTTACCAATTACTTCATCAAGAAATGCTAAGTGGTGGTACTCTGCTTTTC 156
|||| ||||||||||| || || || || ||||| |||||||||||||||||||||||||
Sbjct 323 TCGACGATTGGTTACCGATCACATCTTCCAGAAACGCTAAGTGGTGGTACTCTGCTTTTC 382
Query 157 ACAATGTCACCGCCATGGTCGGTGCCGGAGTTCTTGGACT--CCCTTACGCCATGTCTCA 214
||||||||||||||||||| ||||| || |||||| | || |||| |||| ||||| ||
Sbjct 383 ACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAG-CTTGCCCT-ACGCTATGTC-CA 439
Query 215 G-CTCGGATGGGGACCAGGAATTG-C-AGTGTTGGTTCTATCATGGGTCATAACACTATA 271
|||||||||||||| ||| | | | | | | ||| | |||||| ||||||| | ||
Sbjct 440 ATCTCGGATGGGGACCTGGAGT-GACGATTAT-GGTGATGTCATGGATCATAACGTTGTA 497
Query 272 CACATTATGGCAAATGGTGGAAATGCATGAAATGGTTCCTGGGAAGCGTTTTGATCGTTA 331
|||| | |||||||||||||| |||||||| || ||||| |||||| | ||||| | ||
Sbjct 498 CACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTTGATAGGTA 557
Query 332 CCATGAGCTTGGACAACACGCGTTTGGAGAGAAGCTCGGTCTTTATATCGTTGTGCCGCA 391
|| ||||| || |||||||| ||||| || ||||| || || | ||||| ||||||||
Sbjct 558 TCACGAGCTAGGTCAACACGCTTTTGGTGAAAAGCTTGGCCTATGGATCGTCGTGCCGCA 617
Query 392 ACAA-TTGATCGTTGAAATCGGTGTTTG-CATCGTTTATATGGTCACTGGAGGCAA-ATC 448
|| || ||||| || |||||||| | |||||||||||||||||| ||||| | |||
Sbjct 618 GCAGCTT-ATCGTGGAGGTCGGTGTT-GACATCGTTTATATGGTCACAGGAGG-AGCATC 674
Query 449 TTTAAAGAAATTTCATGAGCTTGTTTGTGACGATTGTAAACCA-ATCA-AACTTACTTAT 506
| |||||| | ||| | || || ||| |||||| ||| | |||| |||| || | |
Sbjct 675 CCTCAAGAAAGTCCATCAACTAGTCTGTCCCGATTGCAAAG-AGATCAGAACT-ACGT-T 731
Query 507 TTC-ATCATGATCTTTGCTTCTGTTCACTTCGTCCTCTCTCATCTTCCCAATTTCAATTC 565
|| ||||||||||||||||| || ||||| || ||||||| |||||||||||||| ||
Sbjct 732 TTGGATCATGATCTTTGCTTCCGTCCACTTTGTTATCTCTCACCTTCCCAATTTCAACTC 791
Query 566 CATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGCT-ACTCAACAATCGCAT 624
|||||| | | || ||||| || || |||||||| || | || ||||||| || || |
Sbjct 792 TATCTCCATCATCTCACTTGCCGCGGCTGTTATGTC-CTTAACTTACTCAACTATTGCTT 850
Query 625 GGGCAT-CATCAG--CAAGCAAAGGCGTTCAAGAAGACGTTCAATACGGTTATAAAGCGA 681
|||| | |||| | || |||||| || || ||| || | ||| | || ||| |
Sbjct 851 GGGC-TGCATCCGTGCA--CAAAGGGGTACATCCAGATGTGGACTACTCTCCTAGAGC-A 906
Query 682 A-AACA-ACAGCCGGTACAGTTTTCAATTTCTTCA--GCGGTTTAGGTGATGTGGCATTT 737
||| | | || | ||| ||||| ||||| | ||| || || |||||||| |||
Sbjct 907 TCAACCGAT-GTTGGAAAAGTATTCAACTTCTTGAATGCG-TTG-GGAGATGTGGCTTTT 963
Query 738 GCTTACGCGGGTCATAATGTGGTCCTTG-AGATCCAAGCAACTATCCCTTCAACGCCTGA 796
||||| || ||||| || || || ||| |||| || || || |||||||| || || ||
Sbjct 964 GCTTATGCAGGTCACAACGTTGTG-TTGGAGATTCAGGCCACAATCCCTTCGACTCCGGA 1022
Query 797 GAAACCCTCAAAAGGTCCCA-TGTGGAGAGGAGTCATCGTTGCTTATATCGTCGTTGCGC 855
|| || || || ||||||| ||||||||||||| || || || || || || || || |
Sbjct 1023 GATGCCATCCAA-GGTCCCAATGTGGAGAGGAGTTATTGTAGCCTACATTGTAGTCGC-C 1080
Query 856 -TCTGTTATTTCCCTGTGGC-TCTAGTCGGATATTATAT-TTTCGGGAACGGAGTGGAAG 912
||||||| |||||||| || | | |||| |||||||| ||| || ||| | || || |
Sbjct 1081 ATCTGTTACTTCCCTGTAGCAT-TCCTCGGCTATTATATCTTT-GGAAACAGCGTTGATG 1138
Query 913 ATAACATTCTCATGTCACTTAAGA-AA-CCGG-CGTGG-TTAATCGCGACAGCGAACATC 968
| ||||| ||||| ||||| || || || | ||| ||| | || | || |||||
Sbjct 1139 ACAACATCCTCAT--CACTTTGGAGAAGCCTATC-TGGCTTATT-GCTATGGCTAACATG 1194
Query 969 TTCGTCGTGATCCATGTCATCGGTAGTTACCAGATATATGCAATGCCGGTATTTGATATG 1028
||||| || ||||||||||| || || || ||||||| ||||||||| || ||||| |||
Sbjct 1195 TTCGTGGTTATCCATGTCATTGGAAGCTATCAGATATTTGCAATGCCAGTTTTTGACATG 1254
Query 1029 ATGGAGACT-TTATTGGTCAAGAAGCTAAATTTCAGA-CCAACCA-CAA-CTCTTCGGTT 1084
| || || || |||||||| ||| | ||||||| | || | ||| ||| || ||
Sbjct 1255 CTCGAAACCGTT-TTGGTCAAAAAGATGAATTTCA-ATCCTTCTTTCAAGCTC--CGCTT 1310
Query 1085 CTTTG-TCCGTAAT-TTCTACGTTGCTG-CAACTATGTTTGTTG-G-TATGACCTTTCCG 1139
| || || ||| | || ||||| ||| || | ||| |||||| | |||| | | |||
Sbjct 1311 CATTACTC-GTAGTCTT-TACGTCGCTTTCA-CGATGATTGTTGCGATATG-CGTC-CCG 1365
Query 1140 TTCTTCGGAGGGCTTTT-GGCGTTCTTTGGTGGATTCGCGTTTGCTCCAACCACATACTT 1198
|| ||||| || || | ||| |||||||| |||||||| ||||| ||||| || ||||
Sbjct 1366 TTTTTCGGTGGACTACTCGGC-TTCTTTGGAGGATTCGCCTTTGCCCCAACAACTTACTA 1424
Query 1199 CCTCCCTTGCATCATTTGG 1217
||| || ||||| || |||
Sbjct 1425 CCTTCCATGCATTATGTGG 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68373142290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5