BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947850 Length=1450 Score E Sequences producing significant alignments: (Bits) Value AT5G39660.1 | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878... 1903 0.0 AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 54.7 2e-06 > AT5G39660.1 | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878699-15881023 FORWARD LENGTH=1906 Length=1906 Score = 1903 bits (1030), Expect = 0.0 Identities = 1323/1457 (91%), Gaps = 49/1457 (3%) Strand=Plus/Plus Query 1 AAGTGAAAAAAGAATCATT--CATGGCTGATCCGGCGATTAAGCTCTTTGGGAAGACGAT 58 ||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 201 AAGTG-AAAAGGAATCATTACCATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGAT 259 Query 59 TCCTTTACCTGAGCTTGCTGTTGTTGTTGATTCCTGTTCTAGCTATACCGGAGTTTTAAC 118 ||||||||||||||||| | |||||||||||| | |||||||||||||||| ||||||| Sbjct 260 TCCTTTACCTGAGCTTG--G-TGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAAC 316 Query 119 CGAAACTCAAGATCAGAATCTTGTTCGGTTATCAGATTCGTGTACC-G-GA-gatgatga 175 |||||||| |||| || ||||||||||||||||||||||||| | || |||||||| Sbjct 317 CGAAACTC-AGAT-----TCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGA 370 Query 176 tgatgagatgggtcg-ttccggtttaggaggaggtgatgatgatgttggtggtgatgGTT 234 ||| ||||||||| | ||||||||||||| ||| || | ||||| || |||||| Sbjct 371 TGAAGAGATGGGT-GATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGGTGA----- 424 Query 235 CTCGTGTTGGAGGAGAGAGCGAGAGTGATAAAAAGGAAGaaaaaaaTAATGAGTGTCAGG 294 | | | ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| Sbjct 425 -T-G-G-TGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGG 480 Query 295 AAGAGTCATTGAGGCATGAATCTAATGATGTTACTACTAATACTACATCGGGTATAACTG 354 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 481 AAGAGTCATTGAGGAATGAATCTAATGATGTTACTAC---TACTACATCGGGTATAACTG 537 Query 355 AAAAAACGGAGACTACAAAGGCTGGGAAGACGAATGAAGAGTCGTCACAGAATGAGACGG 414 |||||||||| || ||||| |||| |||||||||||||| || | | | Sbjct 538 AAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGA---GT--C--------A--G 582 Query 415 GTGGTACTGCTTGCTCTCAAGAGGCTAAGCTAAAGAAACCCGACAAGATTCTGCCGTGCC 474 |||||||||||||||||||||||| ||| |||||||||| || |||||||| ||||| | Sbjct 583 GTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAACCTGATAAGATTCTACCGTGTC 642 Query 475 CGCGATGTAGTAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 534 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 CGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 702 Query 535 CTCGCCATTTCTGCAAGAAATGTCAGAGGTATTGGACAGCTGGTGGAACGATGAGGAATG 594 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 703 CTCGCCATTTCTGCAAGAAATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATG 762 Query 595 TTCCGGTTGGTGCAGGGAGACGCAAGAATAAGAGTCCGGCTTCTCATTATAACCGTCATG 654 ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 763 TTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCATG 822 Query 655 TAAGCATAACATCTGCGGAAGCTATGCAGAAGGCGGCGAGAACCGATCTTCAAAATCCTA 714 |||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct 823 TAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTA 882 Query 715 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCGGTGCTCTGTGAATCAATGGCTTCGG 774 |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | Sbjct 883 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGCTTTGTGAATCTATGGCTTCTG 942 Query 775 GATTGAATCTTGCTGAGAAGTCAATGTTGAAGACACAAACTGTGTTGCAAGAACCCATTG 834 |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| || Sbjct 943 GATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATG 1002 Query 835 AAGGTTTGAAGATTACGGTTCCTTTAAACCCGTCAAACGAAGAGGCCGGAACAGTCAGCC 894 |||| ||||||||||||||||| ||||||| | |||||||||| || ||||||||||||| Sbjct 1003 AAGGCTTGAAGATTACGGTTCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCC 1062 Query 895 CATTACCAAAAGTTCCATGCTTTCCAGGACCACCACCACCAGCTTGGCCATACGCTTGGA 954 | |||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 1063 CGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCA--A-CTTGGCCTTACGCTTGGA 1119 Query 955 ACGGAGTTTCATGGACGGTTTTACCGTTTTATCCTCCACCTGCTTACTGGAGCTGCCCGG 1014 |||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1120 ACGGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGG 1179 Query 1015 GGGTTTCACCGGGGACATGGAACAGCTTCACCTGGATGCCACAACCCAATTCACCATCTG 1074 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1180 GGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCACAACCCAATTCACCATCTG 1239 Query 1075 GGTCTGGTCCAAATTCTCCTACACTAGGTAAACATTCCCGTGATGAGAACGCTGCTGAAC 1134 | || |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1240 GTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAAC 1299 Query 1135 CAGGAGCCACTTTCGAAGAAACCGAGTCACTTGGTAGAGAGAAAAGCAAACCGGAGAGAT 1194 ||||| || |||| || |||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1300 CAGGAACCGCTTTTGATGAAACCGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGAT 1359 Query 1195 GCTTGTGGGTTCCCAAGACGCTGAGGGTCGATGATCCAGAGGAAGCTGCTAAAAGTTCAA 1254 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct 1360 GCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCA 1419 Query 1255 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTTAGAT 1314 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1420 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGAT 1479 Query 1315 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAAACTTCCGGGAAGACGAGCGGAGT 1374 |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 1480 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAGACTTCCGGGAAGAAGACCGGAGT 1539 Query 1375 TGCAAGCAAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAAAAAG 1434 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1540 TGCAAGCGAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAGAAAG 1599 Query 1435 GAGA-GAAATTTAAGCA 1450 ||| ||| | |||||| Sbjct 1600 AAGAAGAA-TCTAAGCA 1615 > AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:17525365-17526306 FORWARD LENGTH=942 Length=942 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 495 ACCAAGTTCTGTTACTACAACAACTATAA 523 ||||||||||||||||||||||||||||| Sbjct 187 ACCAAGTTCTGTTACTACAACAACTATAA 215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71485576080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5