BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947862 Length=769 Score E Sequences producing significant alignments: (Bits) Value AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997)... 1175 0.0 AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)... 580 5e-165 > AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997) | chr5:15826089-15828035 REVERSE LENGTH=1434 Length=1434 Score = 1175 bits (636), Expect = 0.0 Identities = 714/752 (95%), Gaps = 3/752 (0%) Strand=Plus/Plus Query 1 TCTGATCTTTGAGATAGATAATGAGAGAAATGACAGCGAGGTCTGCGGTTTTATCGTCGG 60 |||||| | ||||| |||||||| |||||||||| ||||||||| ||||||||||||||| Sbjct 499 TCTGATATCTGAGAGAGATAATGGGAGAAATGACGGCGAGGTCTTCGGTTTTATCGTCGG 558 Query 61 GGATGTTCAGAGGTTACCACCGGCCGGTGAAGACGGAGGTGAGATCAATAATACGGTCTA 120 ||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||| | Sbjct 559 GGATGTTCAGAAGTTACCACCGGCCGGTGACGACGGAGGTGAGATCACTATTACGGTCGA 618 Query 121 GAGTGAAGTGCCAAGTGTCTTCCGTAAAACCCGCCACATATTCATCAAAACTCTCCACAG 180 |||||| |||||||||||| ||||||||||||||||| |||||||| | ||||||||||| Sbjct 619 GAGTGATGTGCCAAGTGTCATCCGTAAAACCCGCCACGTATTCATCGAGACTCTCCACAG 678 Query 181 ATATTCCTCTCCACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTGGAAGATAAATCAA 240 ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 679 ATATTCCTCTCAACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTAGAGGATAAATCAA 738 Query 241 GATTATTCGAAGCAATGTTTCCAGATAAACCCAGAAGTTATAGGCTTAACGAGGAAGAAT 300 || ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 739 GAGTATTCGAAGCAATGTTTCCAGATAAGCCCAGAAGTCATAGGCTTAACGAGGAAGAAT 798 Query 301 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCGGTGGTAGATA 360 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 799 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCTGTGGTAGATA 858 Query 361 TGCGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 TGAGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 918 Query 421 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTAAAGGGCTTGATCGAGTAATGG 480 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 919 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTCAAGGGCTTGACCGAGTAATGG 978 Query 481 AACC-GTCTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 539 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 AACCAG-CTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 1037 Query 540 CAAACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTGCTTCCTCCGGTTCTT 599 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1038 CACACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTTCTTCCTCCGGTTCTT 1097 Query 600 GAGTTAGTACCTGAAGATGTTCGGAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 659 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1098 GAGTTGGTACCTGAAGATGTTCGAAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 1157 Query 660 GAAAACATGAAGCATAAGGTTAATGGGAGCTTGCTTGCTGATTATAGCAGGTTCAAGAAT 719 || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1158 GAGAATATGAAGCATAAGGTTAATGGGAGCTTGCTTTCTGATTATAGCAGGTTCAAGAAT 1217 Query 720 GAAAGAAAGTTACAAAAAGTAATCGAGTAAAC 751 |||||||| ||||||| | ||||||||||||| Sbjct 1218 GAAAGAAAATTACAAAGA-TAATCGAGTAAAC 1248 > AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997) | chr5:15823735-15825492 REVERSE LENGTH=954 Length=954 Score = 580 bits (314), Expect = 5e-165 Identities = 536/641 (84%), Gaps = 23/641 (4%) Strand=Plus/Plus Query 97 AGGTGAGATCAATAATACGGTCTAGAGTGAAGTGCCAAGTGTCTTCC-GTAAAACCCGCC 155 |||| ||||| | || ||||| ||||||||||| || |||| || |||||| ||||| Sbjct 132 AGGTTAGATC-A-AA-ACGGTGGAGAGTGAAGTGTCACTTGTC-ACCTGTAAAATCCGCC 187 Query 156 ACA-TATTCATC-AAAACTCTCCACAGATATTC-CTCTCCACGAGTCTCCTCAGGCTTTG 212 | | ||||| || |||| | || || |||| || |||||||||||||||||||||| ||| Sbjct 188 A-AGTATTCCTCTAAAA-TATCAACCGATA-TCGCTCTCCACGAGTCTCCTCAGGCCTTG 244 Query 213 TTCGATGAGTATTTGGAAGATAAATCAA-GATTATTCGAAGCAATGTTTCCAGATAAACC 271 || ||||| ||||||||||| ||||||| | || ||||||||||||||||| |||||||| Sbjct 245 TTTGATGAATATTTGGAAGACAAATCAAGGGTT-TTCGAAGCAATGTTTCCGGATAAACC 303 Query 272 CAGAAGTTATAGGCTTAACGAGGAAGAATGGAGAATTCAGATGTTACCAATAAACTTCCT 331 || || ||||||||||| ||||||||||||||||| || |||||||||||||| || | Sbjct 304 CAAAAACTATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAATAAAATTTTT 363 Query 332 CTTCCTTACTGTGTGGCCGGTGGTAGAT-ATGCGG-TTAAGATGCAAATCCAACGGTCAA 389 |||||| |||| ||| || ||||| | | |||||| || |||||||||||||||||||| Sbjct 364 CTTCCTCACTGCGTGTCCAGTGGT-GGTCATGCGGATT-AGATGCAAATCCAACGGTCAG 421 Query 390 GATTATCCGCCAGATGTACCTTTAGATATAACCAAAGTTCTTGAGCTCAACATGATGAGA 449 ||||| || |||| |||||| || | |||||||||||||||||||||||||||| || | Sbjct 422 GATTACCCATCAGACGTACCTCTACACATAACCAAAGTTCTTGAGCTCAACATGACGAAA 481 Query 450 TGGAAGCTTAAAGGGCTTGATCGAGTAATGGAACCGTCTGATTTCAGT-TTGGAAGTCAA 508 ||| ||||| |||||||||| |||||||||||||| ||||||||| | ||||| || || Sbjct 482 TGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCAACTGATTTCACTCTTGGA-GTAAA 540 Query 509 AGGAGCATTGTACCCTGACCGAAGAGGAAAGCAAACAAGGCTCAGAGGTCAACTAGAGAT 568 ||||||||| ||||| ||||| | |||| ||| || ||||||| ||||| |||||| | Sbjct 541 AGGAGCATTATACCCAGACCGGCGTGGAAGGCACACGAGGCTCAAAGGTCGACTAGAAAC 600 Query 569 GAACATAAGCTTTGTGCTTCCTCCGGTTCTTGAG-TTAGTACCTGAAGATGTTCGGAGAA 627 || ||| ||||| ||||||||| | ||||| | | || ||||| ||||||||| |||||| Sbjct 601 GACCATTAGCTTCGTGCTTCCTTCAGTTCTCGCGCTT-GTACCAGAAGATGTTAGGAGAA 659 Query 628 ACTTGGCCAATGCGGTTTTGACCGGTTTAGTGGAAAACATGAAGCATAAGGTTAATGGGA 687 || ||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||| || || Sbjct 660 ACATGGCCAATGCGATTTTGGCCGGTTTGGTGGATAACATGAAGCATAGGGTTATTGAGA 719 Query 688 GCTTGCTTGCTGATTATAGCAGGTTCAAGA-ATGAAAGAAA 727 ||||| | ||||||||||||| ||||| | |||||||||| Sbjct 720 GCTTGGTCGCTGATTATAGCAAATTCAA-ATATGAAAGAAA 759 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37374205368 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5