BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947915
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39210.1 | Symbols: CRR7 | chlororespiratory reduction 7 | c... 769 0.0
> AT5G39210.1 | Symbols: CRR7 | chlororespiratory reduction 7 |
chr5:15703121-15704104 FORWARD LENGTH=686
Length=686
Score = 769 bits (416), Expect = 0.0
Identities = 482/513 (94%), Gaps = 7/513 (1%)
Strand=Plus/Plus
Query 4 ATTTTTCAAGATATCAAAATGGAGTATTCGCTGCAGCAACAGCTTTTCAACAACGGAGAT 63
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 93 ATTTTTCAAGATATCAAAATGGAGTGTTCGCTGCAGAAACAGCTTTTCAACAACGGAGAT 152
Query 64 AAGCTCTTTAGTTCTCGACATAACCAACAGGTTTCGATGGAACAATTTCATGTAACAGAT 123
||||||||||||||||||||||||| || ||||||||| |||||| | ||||| ||||||
Sbjct 153 AAGCTCTTTAGTTCTCGACATAACCGACGGGTTTCGATAGAACAAGTCCATGTGACAGAT 212
Query 124 TCTCTTCTC-GCAAACTCGATAAACCTGTTTCATAAACCTATAAGTTCTCCAATATTGTC 182
|||||| || | ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 213 TCTCTT-TCCGTAAACTCGATAAACCTGTTTCATAAACCTATATGTTATCCAATATCATC 271
Query 183 CATCATCACTTCAAGAAAGAGCAAAAGCCATTTTAGAGTTTGTGCAACAAGGAGAAGAAG 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 272 CATCATCACTTCAAGAAAGAGCAAAAGCCATTTTAGTGTTTGTGCAACAAGGAGAAGAAG 331
Query 243 GGTGCATTATTCGAACTCGGATACGTACGTACTGTTAGAGGCAGGACAAGACGAGCAGTT 302
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 332 GGTGCATT---CGAACTCGGATACATACGTACTGTTAGAGGCAGGACAAGATGAGCAGTT 388
Query 303 TGTGTCGGAAGACGAACTCAAGGCTAAGCTCAAAGGGTGGCTCGAGAATTGGCCGGTGAA 362
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 389 TGTGACGGAAGACGAACTCAAGGCTAAGCTCAGAGGGTGGCTCGAAAATTGGCCGGTGAA 448
Query 363 CTCTTTGCCACCAGACCTGGCTAGGTTCAATGACCTTGATGAAGCCGTCGATTTCTTGGT 422
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 449 CTCTTTGCCACCAGACCTGGCTAGGTTCGATGACCTTGATGAAGCCGTAGATTTCTTGGT 508
Query 423 TAAAGCTGTATGTGAACTTGAAATTCATGGAGAAGTAGGTTCTGTTCAATGGTACCAAGT 482
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 509 TAAAGCTGTATGTGAACTAGAAATTGATGGAGAAGTGGGTTCTGTTCAATGGTACCAAGT 568
Query 483 TCGTCTTGAGTAATTAAA-AAATCGTATTATGT 514
|||||||||||||||||| ||| ||||||||||
Sbjct 569 TCGTCTTGAGTAATTAAATAAA-CGTATTATGT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24614732030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5