BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947918
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34... 364 3e-100
AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein ki... 303 7e-82
> AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein
34 | chr3:10940446-10941833 REVERSE LENGTH=1388
Length=1388
Score = 364 bits (197), Expect = 3e-100
Identities = 236/255 (93%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 1 TTGACGGTTGCGGAGAATTCATGCCGTCTCCTTCTTCAACACCTTCCGATCCAACTTCTC 60
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 500 TTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTC 559
Query 61 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAACCTGACGATTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 560 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCT 619
Query 121 CCTCTGTTCCACCACCGTCTCTTCTTCCATCTTCATCCACAACCGCCACAATTGAGTATC 180
|| | |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 620 CCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATC 679
Query 181 AACCTCATCACCGTCACCACCCTCCTCCTTTGCTAGCTCCTCCTCTT-CCTCGTAGTCCT 239
| |||||||||||||| || ||||||||| |||||||||||| || || |||||||||
Sbjct 680 AGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCG-TTACCACGTAGTCCT 738
Query 240 AGTTCATCTTCTCCG 254
| |||||||||||||
Sbjct 739 AATTCATCTTCTCCG 753
> AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr5:341543-345127 REVERSE LENGTH=3499
Length=3499
Score = 303 bits (164), Expect = 7e-82
Identities = 182/191 (95%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 255 ACAGTAGCTGAGGGAGACAGGAAGAGGACCTGTGAGTTTGTTGTTGGCCAAGGAGACGGA 314
||||||||||||||||||||||| || |||||||||||||||||| |||||||| |||||
Sbjct 969 ACAGTAGCTGAGGGAGACAGGAATAGAACCTGTGAGTTTGTTGTTAGCCAAGGAAACGGA 910
Query 315 CCTCAAGGACCCGCATTGCTCGAAGAACCCGTCTGGGATCTGACCCGAGAGACTATTGCC 374
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 909 CCTCAAGGACCCGCATTGCTCGAAGAACCCGTCTGGGATCCGACCCGAGAGATTATTGCC 850
Query 375 GCTGAAATCGATGACTTGGAGGCTGCCGAGGTGAGGGAACTCGGGGTTTAGGGTTCTGGT 434
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 849 ACTGAAATCGACGACTTGGAGGCTGCCGAGGTGAGGGAACTCGGGGTTTAGGGTTCCGGT 790
Query 435 GAGGTTGTTGT 445
|||||||||||
Sbjct 789 GAGGTTGTTGT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5