BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948127
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47730.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1759 0.0
> AT5G47730.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr5:19334250-19337101 REVERSE LENGTH=1851
Length=1851
Score = 1759 bits (952), Expect = 0.0
Identities = 1029/1067 (96%), Gaps = 1/1067 (0%)
Strand=Plus/Plus
Query 1 AGAGGAAGTGAGCCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGAGGAAG-GAGTCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 523
Query 61 AGCTGATGGATCAAGTTGAGGAGCCATTGAAGCAAACATATGAGAGAGTCCATCAGGGAT 120
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 524 AGCTGATGGATCAAGTTGAGGAGCCACTGAAGAAAACTTATGAGAGAGTCCATCAGGGAT 583
Query 121 ATCTGAGAGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAGCCTATGCAAAGCTC 180
|||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 584 ATCTAAGGGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAACGTATGCAAAGCTC 643
Query 181 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 703
Query 241 CCAAACCCATTGTTCCTACTGAGTTGTATAGGGACGTACGAGATTCTCAACTCATAGGAA 300
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 704 CTAAACCAATTGTTCCTACTGAGTTGTATAGGGATGTACGAGATTCTCAACTCATAGGAA 763
Query 301 TGTCAGGTTACACCAAAGAGGGCTTGCCTGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 764 TGTCAGGTTACACCAAAGAGGGCTTGCCGGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 823
Query 361 TCGACAAAGCTTCTGTTCACTACTATGTCCAGTCCCACATACAAATCAATGAATATAGGG 420
| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 824 TTGACAAAGCTTCTGTTCACTACTATGTCCAATCTCACATACAAATCAATGAATATAGAG 883
Query 421 ACCGTGTATTACTGCCTTCTATCTCTAAGAAGAATGGGCGGCCAATCACCACCTGCGTCA 480
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 884 ACCGTGTTTTACTGCCTTCTATTTCTAAGAAGAATGGGAGGCCAATCACCACCTGCGTCA 943
Query 481 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCGCTAAGCCAAATCAAGTTAGTGACTA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 944 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCTCTAAGCCAAATCAAGTTAGTGACTA 1003
Query 541 TCATATCGACCATCGATGATCTCAACTATCCAGAGAAGACAAACACTTACTATGTTGTGA 600
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1004 TCATATCGACCATTGATGATCTCAACTATCCAGAGAAGACAAACACGTACTATGTTGTGA 1063
Query 601 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 1123
Query 661 CACGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAAGGATGAATTATTGAAGATTATGG 720
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1124 CAAGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAGGGATGAATTATTGAAGATTATGG 1183
Query 721 ACTTCACATCCCTCCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ACTTCACATCCCTGCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 1243
Query 781 AGAGCGCAAATTGTTTTTCTATCGATCATCCCTTCCATCAACAGCTATACAACTATGTGA 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1244 AGAGCGCAAATTGTTTTTCTATCAATCATCCCTTCCATCAACAGCTATACAACTATGTGA 1303
Query 841 AGCACCATTACGAAACCCGGGGACAAGCAGAACCTGCAAAGCAAGGATCGTTCCACGTGG 900
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1304 AGCACCATTATGAAACCCAAGGACAAGCAGAACCTGCAAAGCAAGGATCATTCCACGTGG 1363
Query 901 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAACTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1364 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAGCTGC 1423
Query 961 ACAAGTTTGAGAACCGCAACGGTCTGGCCATGTCCATTGATGACAGAAAAGCCAGTCATG 1020
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1424 ACAAGTTTGAGAACCGCAACGGTCTGGCCGTGTCCATTGATGACAGAAAATCCAGTCATG 1483
Query 1021 AAACGCAGGCAGATGATGACCTCTGAATGCTTCTGAGGGAATTCCTT 1067
|||| | |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1484 AAACACTGGCAAATGGTGACCTCTGAATGCTTCTGAGGGAATTCCTT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5