BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948204 Length=838 Score E Sequences producing significant alignments: (Bits) Value AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family ... 1033 0.0 AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family ... 508 3e-143 > AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family protein | chr5:19133986-19135317 REVERSE LENGTH=1088 Length=1088 Score = 1033 bits (559), Expect = 0.0 Identities = 764/854 (89%), Gaps = 50/854 (6%) Strand=Plus/Plus Query 1 GAGAGAGATCTCT-TCAAGAAAAATGTCAATATCCATGGCGTTATTCTCTCCACCGA--- 56 ||||||||||| | ||| ||||||||| ||||||||||||||||||||||| |||| Sbjct 59 GAGAGAGATCT-TAACAA-AAAAATGTCTATATCCATGGCGTTATTCTCTCCGCCGATCT 116 Query 57 -----T-ACTTCAAAACCCTAATCTCATCCCCAAGATCTCATCTTCTCTCCTCTCCACCA 110 | |||||| ||||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 117 CTTCCTCACTTCAGAACCCTAATCTCATCCCCAAGATCTCAACCTCTCTTCTCTCCACCA 176 Query 111 AGCGTTTCTCTCTCATCTACGTCCCTCGAGCTTCCTCCGACAATGGTACGACTTCACCAA 170 ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| || Sbjct 177 AGCGTTTCTCTCTAATCTCCGTCCCTAGAGCTTCCTCCGACAATGGTACGACTTC-CC-- 233 Query 171 CGTCTGCTTCAGTCTCGGCAACCACCGTCGTGGAGATTCCGAAGCCTG-TGGCTGTGGCT 229 | | | | | || || | | | |||||||||||| | |||||||| Sbjct 234 C--C-G-T-C-GT---GG-A------G------A--TTCCGAAGCCTGCTT-CTGTGGCT 268 Query 230 GTAGAGGAAGTTCCGGTTAAATCTCC-G--GAAAGCTCCTCCGCTTCTGGAAACGGCGCC 286 |||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||| Sbjct 269 GTAGAGGAAGTTCCAGTTAAATCTCCAGCCGAAAGCTCCTCCGCTTCTGAAAACGGCGCC 328 Query 287 GTTGGAGGTGAAGAGACTGATTTGGGTACTGCTGAGACGGTAATCAAATTTGAAGA-TGC 345 ||||||||||||| |||||||| | |||||| ||||||||||||||| | | || ||| Sbjct 329 GTTGGAGGTGAAGCGACTGATTCGAGTACTG---AGACGGTAATCAAATATCA-GAATGC 384 Query 346 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGGAAAACAGATTG 405 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 385 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCAAAACTGATTG 444 Query 406 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 504 Query 466 GACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATTCCATGGTGGGCATGGAT 525 || ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 505 AACGAGTAACGACGAGCTTGTTGTCTTCGATACTTCGATTATTCCATGGTGGGCATGGAT 564 Query 526 GAAGAGATACCATCTACCCGAAGCCGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 585 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 565 GAAGAGATACCATCTACCTGAAGCTGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 624 Query 586 CTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGACTTGTTGATCAAATGGGGAA 645 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 625 CTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGAAA 684 Query 646 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAGTTCTTTTTATCCGCAAGAA 705 |||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| Sbjct 685 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCTTCATCCGTAAGAA 744 Query 706 CGAAGATTTAGACAAACTTAAGGATCTGTTTGATGAGACAACGTTATATGACAAACAATG 765 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 745 TGAAGATTTAGACAAACTTAAGGATCTGTTCGATGAGACTACGTTATATGACAAACAATG 804 Query 766 GCAAGCAGCGTGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTT 825 |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 GCAAGCTGCATGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTC 864 Query 826 TTACA-TCTTTCAT 838 ||||| |||||||| Sbjct 865 TTACAATCTTTCAT 878 > AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family protein | chr4:9803705-9804872 FORWARD LENGTH=1001 Length=1001 Score = 508 bits (275), Expect = 3e-143 Identities = 398/457 (87%), Gaps = 10/457 (2%) Strand=Plus/Plus Query 330 TCAAATTTGAAGATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 388 ||||||| | |||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 353 TCAAATTCCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 411 Query 389 GATGGGAAAACAGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTT 448 ||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 412 GATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTA 471 Query 449 GAAGATAACCCGGAAACGACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATT 508 ||||| || || ||||| || ||||||||||| || || || |||||||| ||||||||| Sbjct 472 GAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTTCGATACATCGATTATT 531 Query 509 CCATGGTGGGCATGGATGAAGAGATACCATC-TACCCGAAGCCGAACTTC-TCAATGGTC 566 ||||||||||| ||||| ||||||||||| | |||| ||||| |||| || | ||||||| Sbjct 532 CCATGGTGGGCTTGGATTAAGAGATACCA-CTTACCTGAAGCTGAAC-TCTTAAATGGTC 589 Query 567 GTGCTGCGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGAC 626 |||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 590 GTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGAC 649 Query 627 TTGTTGATCAAATGGGGAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAG 686 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||| Sbjct 650 TTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGTGGCTGTGGCTGGAG 709 Query 687 TTCTT-TTTATCCGCAAGAACGAAGATTTAGACAAACTTAAGGATCT-GTTTGATGAGAC 744 || || ||||| || ||||| || ||| | || ||||| ||| | || |||||||||||| Sbjct 710 TT-TTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAA-CTTGTTTGATGAGAC 767 Query 745 AACGTTATATGACAAACAATGGCAAGCAGCGTGGAAA 781 || || ||||| || |||||||||||||| |||||| Sbjct 768 TACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAA 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40840361511 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5