BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948265 Length=1986 Score E Sequences producing significant alignments: (Bits) Value AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 1472 0.0 AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bin... 292 7e-78 > AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:18974231-18976009 FORWARD LENGTH=1779 Length=1779 Score = 1472 bits (797), Expect = 0.0 Identities = 932/994 (94%), Gaps = 21/994 (2%) Strand=Plus/Plus Query 21 ATGAACGGCACAACATCATCAATCAACTTCTTAACCTCCGACGATGACGCGT---CGGCG 77 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1 ATGAACGGCACAACATCATCAATCAACTTCTTGACCTCCGACGATGACGCGTCGGCGGCG 60 Query 78 GCTATGGAAGCTTTCATCGGAACAAACCACCACTCATCTCTCTTTCCTccaccaccacaa 137 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 61 GCTATGGAAGCTTTCATTGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCAC-A 119 Query 138 ccaccaccaccaccTTCTTTTCCTCAAACTCAATTCAACGAAGATACTCTTCAACAACGT 197 | || |||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 120 --A-CA--ACCA---------CCTCAGCCTCAGTTCAACGAAGATACTCTTCAACAACGT 165 Query 198 CTCCAAGCTTTAATCGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 257 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 CTCCAAGCTTTAATAGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 225 Query 258 TCACACGACTTCGATTCTTCCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGA 317 ||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 226 TCACACGACTTCGATTCATCCACCGGAGATAACACAGTGATCCTCGGCTGGGGAGATGGT 285 Query 318 TACTACAAAGGagaagaagacaaagagaagaagaagaaCAACGCGAACACGGCGGAGCAA 377 |||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 286 TACTACAAAGGAGAGGAAGATAAAGAGAAGAAGAAGAACAACACCAACACGGCGGAGCAA 345 Query 378 GAGCACCGGAAAAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTT 437 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 346 GAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAATCTCCGGCGGAATTGGGGTT 405 Query 438 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 465 Query 498 ACTCAAAGCTTCGTTAACGGTGTTGGACTTCCCGGAGAATCTTTCTTAAACTCTCGTGTG 557 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 466 ACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGAGAATCTTTCTTAAACTCTCGTGTG 525 Query 558 ATTTGGTTATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 617 ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 526 ATTTGGTTATCCGGGTCTGGTGCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 585 Query 618 CAGATTTACGGGTTGAAGACGATGGTGTGTATCGCGACGCAAAACGGCGTCGTTGAGCTT 677 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 586 CAGATTTACGGGTTAAAGACGATGGTGTGTATCGCGACTCAAAACGGCGTCGTTGAGCTT 645 Query 678 GGTTCGTCGGAAGTTATAAGTCAAAGCTCAGATCTGATGGATAAAGTTAATAACTTGTTT 737 ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 646 GGTTCGTCGGAGGTTATAAGTCAAAGCTCAGATCTGATGCATAAAGTTAACAACTTGTTT 705 Query 738 AACTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGGGTTTTAAT 797 || |||||||||||| | |||| |||||||||| |||||||||||| |||||||||||| Sbjct 706 AATTTCAACAACGGT-G--GTGGAAACAATGGTGTTGAAGCTTCTTCGTGGGGTTTTAAT 762 Query 798 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 822 Query 858 GGAATCGAATCTCCGGCGAGGGTTAGTAATGGTAATAACTCGAATTCGAATTCTAAGTCT 917 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 823 GGAATCGAATCTCCGGCGAGGGTTAATAATGGTAATAACTCGAATTCTAATTCTAAGTCT 882 Query 918 GATTCTCATCAAATTTCGAAGCTTGATAAGAATGATATTAGCTCTGTGGAGAATCAGAAT 977 ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 883 GATTCTCATCAAATTTCTAAGCTTGAGAAGAATGATATTAGCTCTGTAGAGAATCAGAAT 942 Query 978 CGTCAAAGTTCTTGTCTTGTTGAGAGAGATTTGA 1011 ||||||||||| |||||||| |||| |||||||| Sbjct 943 CGTCAAAGTTCGTGTCTTGTCGAGAAAGATTTGA 976 Score = 1249 bits (676), Expect = 0.0 Identities = 765/808 (95%), Gaps = 6/808 (1%) Strand=Plus/Plus Query 1046 CTTTCAAGGTGGGTTGTTGAAATCGAATGAGACTTTGAGTTTCTGTGGTAACGAGAGTAG 1105 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 978 CTTTCAAGGTGGGTTGTTGAAATCTAATGAGACTTTGAGTTTCTGTGGTAATGAGAGTAG 1037 Query 1106 CAAGAAGAGGTCTCCGGTTTCGAAAGGGAGTAATAATGATGAAGGGATGCTTTCTTTTAG 1165 |||||||| || |||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 1038 TAAGAAGAGAACTTCGGTATCTAAAGGGAGTAATAATGATGAAGGGATGCTTTCGTTTAG 1097 Query 1166 TACTGTGGTTCGATCCGCTGCGAAATCGGTTGATTCGGATCATTCTGATCTTGAAGCATC 1225 |||||||||| |||| |||||| || |||||||||||||||||||||||||||||| Sbjct 1098 TACTGTGGTTAGATCAGCTGCG-AA-----TGATTCGGATCATTCTGATCTTGAAGCATC 1151 Query 1226 GGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1285 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 TGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1211 Query 1286 GAAACCGGCGAATGGgagagaagagccgttgaatcatgttgaagcagagaggcagagaag 1345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 GAAACCGGCGAATGGGAGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGAGGCAGAGAAG 1271 Query 1346 agagaagttaaaccagagaTTTTATTCTTTGAGAGCTGTGGTTCCTAATGTTTCGAAGAT 1405 ||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| Sbjct 1272 AGAGAAGTTAAACCAGAGATTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGAT 1331 Query 1406 GGATAAAGCTTCTCTTCTCGGAGATGCTATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1465 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1332 GGATAAAGCTTCGCTTCTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1391 Query 1466 GCAACAAGCGGAATCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1525 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1392 GCAGCAAGCGGAGTCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1451 Query 1526 AGGAAATAATGGGAAAGGTGGCGGGTCGAGGGCGAAAGAACGGAAAAGTTCGAATCAAGA 1585 ||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 1452 AGGGAATAATGGGAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAAGTTCGAATCAAGA 1511 Query 1586 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTGAAGATCATAGGTTGGGATGTGAT 1645 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1512 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGAT 1571 Query 1646 GATACGTGTACAATGCAGCAAGAAGGATCATCCCGGTGCTAGATTCATGGAAGCGCTCAA 1705 |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || || Sbjct 1572 GATACGTGTACAATGCGGCAAGAAAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAA 1631 Query 1706 GGAACTGGATTTGGAAGTGAATCACGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1765 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1632 GGAATTGGATTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1691 Query 1766 ACAAGCTACCGTGAAGATGGGGAGCCAGTTTTTCAATCATGACCAGCTTAAAGTTGCTTT 1825 ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1692 ACAAGCTACGGTGAAGATGGGGAGCCAATTTTTCAATCATGACCAGCTCAAAGTTGCTTT 1751 Query 1826 AATGACGAAAGTCGGAGAAAACTATTGA 1853 ||||||||||||||||||||||||||| Sbjct 1752 GATGACGAAAGTCGGAGAAAACTATTGA 1779 > AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr4:9933366-9935586 REVERSE LENGTH=2221 Length=2221 Score = 292 bits (158), Expect = 7e-78 Identities = 535/709 (75%), Gaps = 57/709 (8%) Strand=Plus/Plus Query 166 CTCAATTCAACGAAGATACTCTTCAACAACGTCTCCAAGCTTTAATCGAATCCGCCGGA- 224 ||||| |||||||||||| ||| || |||||||||||||||||||||||| | | | Sbjct 282 CTCAAGTCAACGAAGATAATCTCCAGCAACGTCTCCAAGCTTTAATCGAAGGAG-CAAAC 340 Query 225 GAAAACTGGACTTACGCTATCTTCTGGCAGATC-TCACACGACTT---C---G-ATTCTT 276 || |||||||||||||| | |||||||| ||| || |||| || | | | | Sbjct 341 GAGAACTGGACTTACGCCGTGTTCTGGCA-ATCATCTCACGGTTTCGCCGGAGAAGACAA 399 Query 277 CCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGATACTACAAAGGagaagaag 336 | || | ||||||| || | | || ||||||||||| || |||||||||||||||| Sbjct 400 CAACAACA-ACAACACAGTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAG 458 Query 337 acaaag---ag-aagaagaagaaC-AA--C-GCGAACACGGCGGAGCAAGAGCACCGGAA 388 | ||| || |||||||| | | || | || | | || || |||||||| || || Sbjct 459 A-GAAGTCTAGAAAGAAGAA-ATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTAA 516 Query 389 AAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTTTCCGATGAATC 448 ||||| || | ||||| || || ||||||||||| || | |||| |||||| | Sbjct 517 GAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGC 576 Query 449 -AAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATGACTCAAAGCT 507 | ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||| Sbjct 577 TGGA-GATGAAGAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCT 635 Query 508 TCGTTAACGGTGTTGGACTTCCC-GGAGAATCTTTCTTAAACTCTCGTGT-GATTTGGTT 565 | || || ||| ||| || || || || |||||| ||| || | ||||||||| Sbjct 636 TTGTCAAGGGTACTGGT-TTACCTGGTCAAGCTTTCTCAAATTCA-GACACGATTTGGTT 693 Query 566 ATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGTCAGATTTA 625 |||||| || | ||||| | || || ||||||| ||||| |||||||||||||||| Sbjct 694 ATCTGGTTCTAATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTA 753 Query 626 CGGGTTG-AAGACGATGGTGTGTATCGCGAC-GCAAAACGGCGTCGTTGAGCTTGGTTCG 683 ||||| || || ||||||||| | ||||| | | || || |||||||||||||||||| Sbjct 754 TGGGTTACAA-ACAATGGTGTGTGTAGCGACAG-AGAATGGTGTCGTTGAGCTTGGTTCG 811 Query 684 TCGGA-AGTTATA-AGTCAAAGCTCAGATCT-GATGGATAAAGTTAATAACTTGTTT-AA 739 ||||| | |||| | |||||| |||||||| | || |||||||| | | ||| ||| || Sbjct 812 TCGGAGA-TTATTCA-TCAAAGTTCAGATCTTGTTG-ATAAAGTTGACACCTT-TTTCAA 867 Query 740 CTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGG-GTTTTAATC 798 || ||||| |||||| ||| || | | || | ||||| ||| |||| ||| Sbjct 868 TTTTAACAATGGTGGTGGTG--AA---T--T--TG--G-TTCTT---GGGCGTTT-AATT 911 Query 799 TGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACC 847 |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 912 TGAATCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACC 960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98393068200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5