BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948643 Length=1479 Score E Sequences producing significant alignments: (Bits) Value AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase h... 1242 0.0 > AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase homolog E1B | chr4:10989952-10991709 FORWARD LENGTH=1758 Length=1758 Score = 1242 bits (672), Expect = 0.0 Identities = 1072/1265 (85%), Gaps = 28/1265 (2%) Strand=Plus/Plus Query 209 CGTCGCGCCTTCACCGTACGCGCCGC-CAGAGGAAAATTCGA-ACGCAAGAAACCTCACG 266 |||||| |||||||||| |||||||| | | ||||| ||||| | | ||||| ||||| | Sbjct 265 CGTCGCTCCTTCACCGTCCGCGCCGCTC-GTGGAAAGTTCGAGA-GGAAGAAGCCTCATG 322 Query 267 TGAACATAGGAACAATAGGTCACGTCGACCATGGCAAAACAACACTAACCGCAGCGT-TA 325 | ||||| ||||| || ||||| || |||||||| ||||| || |||||||||| | || Sbjct 323 TCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACTACTTTAACCGCAGC-TCTA 381 Query 326 ACAATGGCTTTAGCTT-CAGTAGGAAACAGTGTAGCCAAAAAATACGACGAAATCGACGC 384 || |||||| | |||| || | || ||| || || ||||| |||||||| || ||||| Sbjct 382 ACCATGGCTCTCGCTTCCA-TTGGTTCCAGCGTCGCTAAAAAGTACGACGAGATTGACGC 440 Query 385 AGCTCCTGAAGAAAGAGCTCGTGGTATCACAATCAACACTGCAACGGTCGAATACGAAAC 444 || || || || ||||||||||||||||||||||||||||| || || || ||||| || Sbjct 441 TGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCTACTGTTGAGTACGAGAC 500 Query 445 AGAGAATCGTCATTACGCTCATGTTGATTGTCCTGGTCATGCTGATTATGTCAAGAACAT 504 ||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||| || Sbjct 501 TGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCTGATTACGTTAAGAATAT 560 Query 505 GATTACTGGTGCTGCTCAAATGGATGGTGCGATTCTTGTTGTCTCTGGTGCTGATGGACC 564 |||||| || ||||| || ||||| || || || || ||||| || || || ||||| || Sbjct 561 GATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTTTCCGGCGCCGATGGTCC 620 Query 565 AATGCCACAAACTAAAGAACATAT-CTTGTTGGCGAAGCAAGTTGGTGTTCCTGATATGG 623 ||||| || |||||||| ||||| ||| ||||| ||||| ||||||||||||||||||| Sbjct 621 TATGCCTCAGACTAAAGAGCATATCCTT-TTGGCTAAGCAGGTTGGTGTTCCTGATATGG 679 Query 624 TTGTGTTTCTTAATAAAGAAGATCAAGTTGATGATGCTGAGCTTT-TAGAGCTTGTTGAG 682 ||||||||||||| ||||| |||||||| |||||||| ||| || ||||||| |||||| Sbjct 680 TTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAG-TTGCTAGAGCTCGTTGAG 738 Query 683 CTTGAGGTTCGCGAGCTTTTATCGTCTTATGAGTTTAATGGCGATGATATTCCGATTATT 742 ||||||||||| |||||| | ||||||||||| ||||| || ||||||||||||||||| Sbjct 739 CTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGATGATATTCCGATTATC 798 Query 743 TCCGGTTCTGCT-TTGTTAGCTGTAGAGACT-TTGACTGAGAAACCTAATGTTAAGAGAG 800 || ||||||||| || ||||| || |||||| || |||||||| ||||| |||||||||| Sbjct 799 TCTGGTTCTGCTCTT-TTAGCCGTTGAGACTCTT-ACTGAGAATCCTAAGGTTAAGAGAG 856 Query 801 GTGAGAATAAATGGGTTGATAAGATTTATGAG-TTGATGGATTCTGTTGAT-AGTTATAT 858 |||| || |||||||| |||||||||||||| || |||||| |||||||| | ||| || Sbjct 857 GTGATAACAAATGGGTAGATAAGATTTATGAACTT-ATGGATGCTGTTGATGA-TTACAT 914 Query 859 CCCGATTCCGACTAG-G-CAGACGGAGTTGCCGTTTTTGTTGGCGGTTGAGGATGTTTTT 916 ||| || || | || | || || || ||||| || ||||| || ||||||||||| || Sbjct 915 CCCTATCCCT-C-AGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGAGGATGTGTTC 972 Query 917 TCGATTACTGGTCGTGGTACGGTTGCTACGGGGCGTGTCGAAAGAGGTT-GTGTTAAGGT 975 || || ||||| ||||||||||| ||||| ||||||||||| |||||| | |||||||| Sbjct 973 TCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTACG-GTTAAGGT 1031 Query 976 TGGGGAGACTGTTGATTTGGTGGGATTGAGAGAGACTAGGAATTATACGGTTACCGGGGT 1035 || |||||||| ||||| ||||| ||||| |||||||||| ||| || || || ||||| Sbjct 1032 AGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGTCACTGGGGT 1091 Query 1036 GGAAATGTTTCAGAAGATTCTTGATGAAGCTATGGCTGGTGATAATGTAGGATTGTTGCT 1095 |||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| Sbjct 1092 TGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGGGTTGTTGCT 1151 Query 1096 TAGAGGTATACAAAAGGCGGATATTCAGAGAGGTATGGTTTTGGCTAAGCCGGGTTCGAT 1155 ||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1152 TAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCCGGGATCGAT 1211 Query 1156 TACTCCACATACTAAGTTTGAAGCGATTGTTTATGTGTTGAAGAAAGAAGAAGGTGGAAG 1215 |||||||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct 1212 TACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGAAGGTGGAAG 1271 Query 1216 ACATTCGCCGTT-TTTCGCTGGGTATAGACCTCAGTTTTACATGAGGACTACGGATGTTA 1274 ||||| || || ||| || ||||| || |||||||| ||||||||||| || ||||||| Sbjct 1272 GCATTCTCCATTCTTT-GCAGGGTACAGGCCTCAGTTCTACATGAGGACGACTGATGTTA 1330 Query 1275 CGGGTAAAGTGACTAAGATTATGAATGATAAAGACGAGGAATCGAAGATGGTTATGCCTG 1334 ||||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||| | Sbjct 1331 CGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGTTATGCCCG 1390 Query 1335 GTGATCGTGTTAAGATTGTTGTTGAGCTTATTGTGCCTGTTGCTTGTGAACAAGGGATGA 1394 ||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1391 GTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACAAGGGATGA 1450 Query 1395 GGTTTGCTATTAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTGATTCAGTCGATTATCG 1454 |||||||||| |||||||||||||||||||||||||||||||| ||| | |||| ||| Sbjct 1451 GGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTGGGACGATCCTCG 1510 Query 1455 AATGA 1459 ||||| Sbjct 1511 AATGA 1515 Score = 62.1 bits (33), Expect = 2e-08 Identities = 38/40 (95%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 103 TAAAC-CAAAATCCCTAACTCTCTCTTCCTCCTTCCTCCC 141 ||||| ||||| |||||||||||||||||||||||||||| Sbjct 186 TAAACTCAAAA-CCCTAACTCTCTCTTCCTCCTTCCTCCC 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72941391885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5