BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948645 Length=344 Score E Sequences producing significant alignments: (Bits) Value AT5G44580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 424 4e-118 > AT5G44580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44582.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17979311-17980411 FORWARD LENGTH=543 Length=543 Score = 424 bits (229), Expect = 4e-118 Identities = 306/342 (89%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 5 AAAGAAAGAATAAGAGATGGAAA-ATAAAACGTTTTCTTCAAACTCTATTCATTTGCTCA 63 ||||| |||| |||||||||||| | |||| |||||||||||| | |||||||||||||| Sbjct 1 AAAGAGAGAAAAAGAGATGGAAAGA-AAAAAGTTTTCTTCAAAATTTATTCATTTGCTCA 59 Query 64 TTGTGTTTTTGCTTCTTTGTACCTTTCTTTCCCGTACCGAATCTGCTCGTCCTTCTCACC 123 |||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||| Sbjct 60 TTGTGTTTTTGCTTCTTTGTACGTTTCTTTCTCGTACCGAATCTGCTCTTCCTTATCACC 119 Query 124 ATGAACTACTCTCAATCACCGGGAGGACGATGATGAGTAATTATAAGACCAATAGTGCCA 183 ||||||| | || | ||||||| | ||||| | |||||||| |||| ||||||| Sbjct 120 ATGAACT-GT-TC--T--TGGGGAGGAAGCGGATGAATTATTATAAGCCCAACAGTGCCA 173 Query 184 TAGGAACACCATCATCAACCAGTAACCATGCTCCAGGCGGTAATGGGAGGAAATTGATGA 243 ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| ||||||| Sbjct 174 TAGGAACACCATCATCAACTAGTGACCACGCTCCAGGCAGTAATGGGAGGAAGTTGATGA 233 Query 244 GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGACATGGTGGTG 303 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 234 GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGGCATGGTGGGG 293 Query 304 GTCGCACTCCAGCCCCCTAGTATATATAT-T-AATGTGTAAT 343 ||||||||||||||||||||||||||||| | |||||||||| Sbjct 294 GTCGCACTCCAGCCCCCTAGTATATATATATTAATGTGTAAT 335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16085679680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5