BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948645

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44580.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   424    4e-118


> AT5G44580.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant 
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G44582.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:17979311-17980411 FORWARD LENGTH=543
Length=543

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 306/342 (89%), Gaps = 10/342 (3%)
 Strand=Plus/Plus

Query  5    AAAGAAAGAATAAGAGATGGAAA-ATAAAACGTTTTCTTCAAACTCTATTCATTTGCTCA  63
            ||||| |||| |||||||||||| | |||| |||||||||||| | ||||||||||||||
Sbjct  1    AAAGAGAGAAAAAGAGATGGAAAGA-AAAAAGTTTTCTTCAAAATTTATTCATTTGCTCA  59

Query  64   TTGTGTTTTTGCTTCTTTGTACCTTTCTTTCCCGTACCGAATCTGCTCGTCCTTCTCACC  123
            |||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||
Sbjct  60   TTGTGTTTTTGCTTCTTTGTACGTTTCTTTCTCGTACCGAATCTGCTCTTCCTTATCACC  119

Query  124  ATGAACTACTCTCAATCACCGGGAGGACGATGATGAGTAATTATAAGACCAATAGTGCCA  183
            |||||||  | ||  |    ||||||| |  ||||| | |||||||| |||| |||||||
Sbjct  120  ATGAACT-GT-TC--T--TGGGGAGGAAGCGGATGAATTATTATAAGCCCAACAGTGCCA  173

Query  184  TAGGAACACCATCATCAACCAGTAACCATGCTCCAGGCGGTAATGGGAGGAAATTGATGA  243
            ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| |||||||
Sbjct  174  TAGGAACACCATCATCAACTAGTGACCACGCTCCAGGCAGTAATGGGAGGAAGTTGATGA  233

Query  244  GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGACATGGTGGTG  303
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  234  GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGGCATGGTGGGG  293

Query  304  GTCGCACTCCAGCCCCCTAGTATATATAT-T-AATGTGTAAT  343
            ||||||||||||||||||||||||||||| | ||||||||||
Sbjct  294  GTCGCACTCCAGCCCCCTAGTATATATATATTAATGTGTAAT  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5