BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948708 Length=2020 Score E Sequences producing significant alignments: (Bits) Value AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3066 0.0 > AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17814336-17816309 FORWARD LENGTH=1974 Length=1974 Score = 3066 bits (1660), Expect = 0.0 Identities = 1873/1978 (95%), Gaps = 5/1978 (0%) Strand=Plus/Plus Query 21 ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAATCCCATTAACATAAGCTTG 80 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1 ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAACCCCATTAACATTAGCTTG 60 Query 81 CTTTCAAAACAACTACTTCAGCTTGGAAGAACCAATAACAACAATTCCAGTACCTTCTCA 140 |||||||||||| |||||||||||||||||| | | | ||||||||| ||||||||||| Sbjct 61 CTTTCAAAACAATTACTTCAGCTTGGAAGAA-C-A-AGTAACAATTCCGGTACCTTCTCA 117 Query 141 GAGATCAGTCACCAAAGAGAGCTTCTAGTGTCTTCACTCATCTCAAAGCTCGACGATTGC 200 ||||||||| | |||| ||| |||||||||||||||||||||||||||||||| |||||| Sbjct 118 GAGATCAGTAATCAAAAAGAACTTCTAGTGTCTTCACTCATCTCAAAGCTCGATGATTGC 177 Query 201 ATCAATCTCAATCAAATCAAGCAAATTCATGGTCATGTTCTCCGTAAAGGTCTCGATCAA 260 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 178 ATCAATCTCAATCAAATCAAGCAAATTCATGGCCATGTTCTCCGTAAAGGTCTCGATCAA 237 Query 261 AGCTGTTACATTCTCACCAAGCTAATTCGCACGTTAACCAAGCTCGGTGTTCCAATGGAT 320 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 238 AGCTGTTACATTCTCACGAAGCTAATTCGCACGTTAACGAAGCTCGGTGTTCCAATGGAT 297 Query 321 CCATATC-CTCGCCGTGTAATCGAGCCTGTTCAGTTCCGGAACCCATTTCTATGGACCGC 379 ||||| | ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 298 CCATA-CGCTCGCCGTGTAATCGAGCCTGTTCAATTCCGGAACCCGTTTCTATGGACCGC 356 Query 380 AGTGATTCGTGGGTATACGATTGAAGGTAAATTCGATGAAGCTATTGCTATGTATGGATG 439 |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| Sbjct 357 AGTGATTCGTGGGTATGCGATAGAAGGTAAATTTGATGAAGCTATTGCTATGTATGGATG 416 Query 440 TATGAGGAAAGAAGAGATTACGCCAGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG 499 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 417 TATGAGGAAAGAAGAGATTACGCCTGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG 476 Query 500 TGGATTAATGGGAGATTTGAATTTAGGTCGGCAGTTTCATGCACAGACGTTTAGACTTAG 559 |||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 477 TGGAACAATGAAAGATTTGAATTTGGGTCGTCAGTTTCATGCACAGACGTTTAGACTTAG 536 Query 560 AGGGTTTTGTTTTGTATATGTTGGGAATACAATGATTGATATGTATGTGAAATGTGGGTC 619 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 537 AGGGTTTTGTTTTGTATACGTTGGGAATACAATGATTGATATGTATGTGAAATGTGAATC 596 Query 620 TATTGTTTGTGCGCGTAAGGTGTTTGACGAAATGCCTGAACGAGATGTGATTTCGTGGAC 679 ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 597 TATTGATTGTGCGCGTAAGGTGTTTGATGAAATGCCTGAACGAGATGTGATATCGTGGAC 656 Query 680 TGAGCTTATTGCTGCGTATGCTAGAGTTGGGAATATGGAATCTGCTGCGGATTTGTTTGA 739 ||||||||||||||||||||| |||||||| |||||||||| ||| ||||| ||||||| Sbjct 657 TGAGCTTATTGCTGCGTATGCGAGAGTTGGAAATATGGAATGTGCAGCGGAACTGTTTGA 716 Query 740 AAGTTTGCCTACGAAAGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA 799 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AAGTTTGCCTACGAAGGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA 776 Query 800 TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC 859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC 836 Query 860 TGATGAGGTTACTGTGGCTGGATATATATCGGCCTGTGCGCAGCTGGGAGCAAGTAAATA 919 ||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||| Sbjct 837 TGATGAGGTTACTGTCGCCGGATATATATCGGCTTGTGCGCAGCTTGGAGCAAGTAAATA 896 Query 920 CGCTGATCGAGCTGTTCAAATCGCTCAGAAATCTGGGTATTCTCCTAGGGATCATGTTGT 979 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 897 CGCTGATCGGGCTGTTCAAATTGCTCAGAAATCTGGGTATTCTCCTAGTGATCACGTTGT 956 Query 980 TATTGGGTCTGCGTTGATAGATATGTACTCAAAATGCGGAAATGTAGAAGAGGCAGTTAA 1039 ||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 957 TATCGGGTCTGCTTTGATAGATATGTACTCGAAATGTGGAAACGTAGAAGAGGCAGTTAA 1016 Query 1040 TGTGTTTGTGTCGATGAACAACAAAAACGTTTTCTCTTACAGTTCGATGATCCTTGGTCT 1099 ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||| Sbjct 1017 TGTGTTTATGTCGATGAACAACAAAAACGTTTTCACTTATAGTTCGATGATCCTAGGTCT 1076 Query 1100 TGCTATGCACGGACGTGCTCAAGAGGCTTTAGATCTGTTCCACTACATGGTAACGCAGAC 1159 ||||| |||||| |||||||||||||||||| |||| || || ||||||||||| ||||| Sbjct 1077 TGCTACGCACGGGCGTGCTCAAGAGGCTTTACATCTTTTTCATTACATGGTAACACAGAC 1136 Query 1160 AGCGATAAAACCAAACACGGTTACATTTGTTGGTGCGCTTACGGCTTGCAGCCACTCGGG 1219 || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1137 AGAGATAAAACCAAATACGGTTACATTTGTTGGTGCGCTTATGGCTTGCAGCCACTCGGG 1196 Query 1220 ACTCGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTCGGTGTTGAACC 1279 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1197 ACTTGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTTGGTGTTCAACC 1256 Query 1280 AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTGCAGGGCGGTTACAAGA 1339 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1257 AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTACAGGGCGGTTACAAGA 1316 Query 1340 AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAACCACACGGAGGTGTATGGGGTGCATT 1399 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1317 AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAGCCACACGGAGGTGTATGGGGTGCATT 1376 Query 1400 GCTCGGTGCCTGCAGGATTCACAACAATCCAGACATAGCAGAGATTGCTGCAGAACATTT 1459 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1377 GCTCGGTGCCTGCAGGATTCACAACAATCCAGAGATAGCAGAGATTGCTGCAGAACATTT 1436 Query 1460 GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCTAACGTCTACTCGTC 1519 ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 1437 GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCCAATGTCTACGCGTC 1496 Query 1520 AGCTGGAGACTGGGGCAGCGTTTTAAGAGTGAGGAAACTGATTAAAGAAAAGGGTTTGAA 1579 |||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| Sbjct 1497 AGCTGGAGACTGGGGCGGAGTTTTAAGAGTGCGGAAACTGATTAAAGAAAAGGGTTTGAA 1556 Query 1580 GAAGACACCGGCGGTTAGTTGGGTTGTAGATAAGAACGGTCAGATGCATAAGTTTTTCCC 1639 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1557 GAAGACACCCGCGGTTAGTTGGGTTGTAGATAAGAATGGTCAGATGCATAAGTTTTTCCC 1616 Query 1640 GGGAAACCTAAACCATCCAATGTCAAAAAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA 1699 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1617 TGGAAACCTGAACCATCCAATGTCAAATAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA 1676 Query 1700 AAGATTAACGGCACTAGGGTATCAACCGGATTTAAGCTCTGTGCCCTACGACGTGAGTGA 1759 ||||||||||| | |||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 1677 AAGATTAACGGTATTAGGATATCAACCGGATTTGAGCTCTGTGCCATACGACGTGAGTGA 1736 Query 1760 CAATGCAAAGAGGTTGATACTGATACAGCACACCGAGAAGCTGGCTTTAGCGTTCTCTTT 1819 |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1737 CAATGCGAAGAGGTTGATACTGATACAGCATACCGAGAAGCTAGCTTTAGCGTTCTCTTT 1796 Query 1820 ACTCACTACGAACAGAGATTCTACAATAAAAATAATGAAGAATTTGAGGATGTGCCAAGA 1879 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| Sbjct 1797 ACTCACTACGAACAGAGATTCTACGATAACAATAATGAAGAATTTGAGGATGTGCCTAGA 1856 Query 1880 TTGTCACATGTTTATGCGTTTAGCATCAGAGGTTACAGGGAGGGTGATTATAATGAGGGA 1939 |||||||| |||||||||||| ||||||||||| ||||||| ||| |||||||||||||| Sbjct 1857 TTGTCACAAGTTTATGCGTTTGGCATCAGAGGTCACAGGGAAGGTAATTATAATGAGGGA 1916 Query 1940 TAATATGAGATTCCACCATTTTAGGAGTGGAGCTTGTTCTTGTGGTGATTTTTGGTGA 1997 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1917 TAATATGAGATTCCACCATTTTAGGAGTGGAGATTGTTCTTGTGGTGATTTTTGGTGA 1974 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100099886730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5