BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948708

Length=2020
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...  3066    0.0  


> AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr5:17814336-17816309 FORWARD LENGTH=1974
Length=1974

 Score = 3066 bits (1660),  Expect = 0.0
 Identities = 1873/1978 (95%), Gaps = 5/1978 (0%)
 Strand=Plus/Plus

Query  21    ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAATCCCATTAACATAAGCTTG  80
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  1     ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAACCCCATTAACATTAGCTTG  60

Query  81    CTTTCAAAACAACTACTTCAGCTTGGAAGAACCAATAACAACAATTCCAGTACCTTCTCA  140
             |||||||||||| |||||||||||||||||| | | |  ||||||||| |||||||||||
Sbjct  61    CTTTCAAAACAATTACTTCAGCTTGGAAGAA-C-A-AGTAACAATTCCGGTACCTTCTCA  117

Query  141   GAGATCAGTCACCAAAGAGAGCTTCTAGTGTCTTCACTCATCTCAAAGCTCGACGATTGC  200
             ||||||||| | |||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  118   GAGATCAGTAATCAAAAAGAACTTCTAGTGTCTTCACTCATCTCAAAGCTCGATGATTGC  177

Query  201   ATCAATCTCAATCAAATCAAGCAAATTCATGGTCATGTTCTCCGTAAAGGTCTCGATCAA  260
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  178   ATCAATCTCAATCAAATCAAGCAAATTCATGGCCATGTTCTCCGTAAAGGTCTCGATCAA  237

Query  261   AGCTGTTACATTCTCACCAAGCTAATTCGCACGTTAACCAAGCTCGGTGTTCCAATGGAT  320
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  238   AGCTGTTACATTCTCACGAAGCTAATTCGCACGTTAACGAAGCTCGGTGTTCCAATGGAT  297

Query  321   CCATATC-CTCGCCGTGTAATCGAGCCTGTTCAGTTCCGGAACCCATTTCTATGGACCGC  379
             ||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  298   CCATA-CGCTCGCCGTGTAATCGAGCCTGTTCAATTCCGGAACCCGTTTCTATGGACCGC  356

Query  380   AGTGATTCGTGGGTATACGATTGAAGGTAAATTCGATGAAGCTATTGCTATGTATGGATG  439
             |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  357   AGTGATTCGTGGGTATGCGATAGAAGGTAAATTTGATGAAGCTATTGCTATGTATGGATG  416

Query  440   TATGAGGAAAGAAGAGATTACGCCAGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG  499
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  417   TATGAGGAAAGAAGAGATTACGCCTGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG  476

Query  500   TGGATTAATGGGAGATTTGAATTTAGGTCGGCAGTTTCATGCACAGACGTTTAGACTTAG  559
             ||||  ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct  477   TGGAACAATGAAAGATTTGAATTTGGGTCGTCAGTTTCATGCACAGACGTTTAGACTTAG  536

Query  560   AGGGTTTTGTTTTGTATATGTTGGGAATACAATGATTGATATGTATGTGAAATGTGGGTC  619
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||
Sbjct  537   AGGGTTTTGTTTTGTATACGTTGGGAATACAATGATTGATATGTATGTGAAATGTGAATC  596

Query  620   TATTGTTTGTGCGCGTAAGGTGTTTGACGAAATGCCTGAACGAGATGTGATTTCGTGGAC  679
             ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  597   TATTGATTGTGCGCGTAAGGTGTTTGATGAAATGCCTGAACGAGATGTGATATCGTGGAC  656

Query  680   TGAGCTTATTGCTGCGTATGCTAGAGTTGGGAATATGGAATCTGCTGCGGATTTGTTTGA  739
             ||||||||||||||||||||| |||||||| |||||||||| ||| |||||  |||||||
Sbjct  657   TGAGCTTATTGCTGCGTATGCGAGAGTTGGAAATATGGAATGTGCAGCGGAACTGTTTGA  716

Query  740   AAGTTTGCCTACGAAAGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA  799
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  717   AAGTTTGCCTACGAAGGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA  776

Query  800   TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC  859
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  777   TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC  836

Query  860   TGATGAGGTTACTGTGGCTGGATATATATCGGCCTGTGCGCAGCTGGGAGCAAGTAAATA  919
             ||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct  837   TGATGAGGTTACTGTCGCCGGATATATATCGGCTTGTGCGCAGCTTGGAGCAAGTAAATA  896

Query  920   CGCTGATCGAGCTGTTCAAATCGCTCAGAAATCTGGGTATTCTCCTAGGGATCATGTTGT  979
             ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct  897   CGCTGATCGGGCTGTTCAAATTGCTCAGAAATCTGGGTATTCTCCTAGTGATCACGTTGT  956

Query  980   TATTGGGTCTGCGTTGATAGATATGTACTCAAAATGCGGAAATGTAGAAGAGGCAGTTAA  1039
             ||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct  957   TATCGGGTCTGCTTTGATAGATATGTACTCGAAATGTGGAAACGTAGAAGAGGCAGTTAA  1016

Query  1040  TGTGTTTGTGTCGATGAACAACAAAAACGTTTTCTCTTACAGTTCGATGATCCTTGGTCT  1099
             ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct  1017  TGTGTTTATGTCGATGAACAACAAAAACGTTTTCACTTATAGTTCGATGATCCTAGGTCT  1076

Query  1100  TGCTATGCACGGACGTGCTCAAGAGGCTTTAGATCTGTTCCACTACATGGTAACGCAGAC  1159
             ||||| |||||| |||||||||||||||||| |||| || || ||||||||||| |||||
Sbjct  1077  TGCTACGCACGGGCGTGCTCAAGAGGCTTTACATCTTTTTCATTACATGGTAACACAGAC  1136

Query  1160  AGCGATAAAACCAAACACGGTTACATTTGTTGGTGCGCTTACGGCTTGCAGCCACTCGGG  1219
             || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1137  AGAGATAAAACCAAATACGGTTACATTTGTTGGTGCGCTTATGGCTTGCAGCCACTCGGG  1196

Query  1220  ACTCGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTCGGTGTTGAACC  1279
             ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct  1197  ACTTGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTTGGTGTTCAACC  1256

Query  1280  AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTGCAGGGCGGTTACAAGA  1339
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1257  AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTACAGGGCGGTTACAAGA  1316

Query  1340  AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAACCACACGGAGGTGTATGGGGTGCATT  1399
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1317  AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAGCCACACGGAGGTGTATGGGGTGCATT  1376

Query  1400  GCTCGGTGCCTGCAGGATTCACAACAATCCAGACATAGCAGAGATTGCTGCAGAACATTT  1459
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1377  GCTCGGTGCCTGCAGGATTCACAACAATCCAGAGATAGCAGAGATTGCTGCAGAACATTT  1436

Query  1460  GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCTAACGTCTACTCGTC  1519
             ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct  1437  GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCCAATGTCTACGCGTC  1496

Query  1520  AGCTGGAGACTGGGGCAGCGTTTTAAGAGTGAGGAAACTGATTAAAGAAAAGGGTTTGAA  1579
             |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct  1497  AGCTGGAGACTGGGGCGGAGTTTTAAGAGTGCGGAAACTGATTAAAGAAAAGGGTTTGAA  1556

Query  1580  GAAGACACCGGCGGTTAGTTGGGTTGTAGATAAGAACGGTCAGATGCATAAGTTTTTCCC  1639
             ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1557  GAAGACACCCGCGGTTAGTTGGGTTGTAGATAAGAATGGTCAGATGCATAAGTTTTTCCC  1616

Query  1640  GGGAAACCTAAACCATCCAATGTCAAAAAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA  1699
              |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1617  TGGAAACCTGAACCATCCAATGTCAAATAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA  1676

Query  1700  AAGATTAACGGCACTAGGGTATCAACCGGATTTAAGCTCTGTGCCCTACGACGTGAGTGA  1759
             ||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct  1677  AAGATTAACGGTATTAGGATATCAACCGGATTTGAGCTCTGTGCCATACGACGTGAGTGA  1736

Query  1760  CAATGCAAAGAGGTTGATACTGATACAGCACACCGAGAAGCTGGCTTTAGCGTTCTCTTT  1819
             |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  1737  CAATGCGAAGAGGTTGATACTGATACAGCATACCGAGAAGCTAGCTTTAGCGTTCTCTTT  1796

Query  1820  ACTCACTACGAACAGAGATTCTACAATAAAAATAATGAAGAATTTGAGGATGTGCCAAGA  1879
             |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct  1797  ACTCACTACGAACAGAGATTCTACGATAACAATAATGAAGAATTTGAGGATGTGCCTAGA  1856

Query  1880  TTGTCACATGTTTATGCGTTTAGCATCAGAGGTTACAGGGAGGGTGATTATAATGAGGGA  1939
             |||||||| |||||||||||| ||||||||||| ||||||| ||| ||||||||||||||
Sbjct  1857  TTGTCACAAGTTTATGCGTTTGGCATCAGAGGTCACAGGGAAGGTAATTATAATGAGGGA  1916

Query  1940  TAATATGAGATTCCACCATTTTAGGAGTGGAGCTTGTTCTTGTGGTGATTTTTGGTGA  1997
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1917  TAATATGAGATTCCACCATTTTAGGAGTGGAGATTGTTCTTGTGGTGATTTTTGGTGA  1974



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 100099886730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5