BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948739

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44005.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   472    1e-132


> AT5G44005.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; Has 35333 Blast hits to 34131 
proteins in 2444 species: Archae - 798; Bacteria - 22429; 
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other 
Eukaryotes - 9610 (source: NCBI BLink). | chr5:17704903-17705558 
REVERSE LENGTH=656
Length=656

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 303/326 (93%), Gaps = 3/326 (1%)
 Strand=Plus/Plus

Query  1    TAAACTAAACTTTAAAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA  60
            |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  47   TAAACT-AACTCT-AAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA  104

Query  61   TGGGGAAAGCGAATCGGAAGCTCGACGACGGTTTCAGGGACACTAGGAAACTCGGAGGAA  120
            ||||||||||||||||||||||||||||||| |||||  || ||||||||| | ||||||
Sbjct  105  TGGGGAAAGCGAATCGGAAGCTCGACGACGGCTTCAGCAACGCTAGGAAACACCGAGGAA  164

Query  121  AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGACAACCGCGTGTTCTTGTGAAACAG  180
            |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct  165  AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGAAAACCACGTGTTCTCGTGAAGCAG  224

Query  181  TTTGTTTGGAGGCTTAAATCGCGTTTGAGGTGGTCGCGGAAGAGTGATCATAATAATATT  240
            ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct  225  TTTGTTTGGAGGCTTAAATCGCGCTTAAGGTGGTCTCGGAAGAGTGATCATAATAATATT  284

Query  241  CAGTGTAGTTATGATCTCCGGAGTTATCATCTTAACTTCGACGACGGTTGGTCTCGACGA  300
            ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct  285  CAGTGTAGTTATGATCTCCGGAGCTATCATCTGAATTTCGACGACGGTTGGTCTCGCCGA  344

Query  301  CGGTGATTTTTAAATAAATAGACGTT  326
            |||||||||| || || |||||||||
Sbjct  345  CGGTGATTTT-AATTACATAGACGTT  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5