BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948739 Length=328 Score E Sequences producing significant alignments: (Bits) Value AT5G44005.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 472 1e-132 > AT5G44005.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17704903-17705558 REVERSE LENGTH=656 Length=656 Score = 472 bits (255), Expect = 1e-132 Identities = 303/326 (93%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 1 TAAACTAAACTTTAAAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA 60 |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 TAAACT-AACTCT-AAAAGCTATGAACAAACAAAGTTTGAAGAGACTTCAGTTCCGGAGA 104 Query 61 TGGGGAAAGCGAATCGGAAGCTCGACGACGGTTTCAGGGACACTAGGAAACTCGGAGGAA 120 ||||||||||||||||||||||||||||||| ||||| || ||||||||| | |||||| Sbjct 105 TGGGGAAAGCGAATCGGAAGCTCGACGACGGCTTCAGCAACGCTAGGAAACACCGAGGAA 164 Query 121 AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGACAACCGCGTGTTCTTGTGAAACAG 180 |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||| Sbjct 165 AGAACGATTGTGGCGTTTGCGTTCTCATGTTGTGGAAAACCACGTGTTCTCGTGAAGCAG 224 Query 181 TTTGTTTGGAGGCTTAAATCGCGTTTGAGGTGGTCGCGGAAGAGTGATCATAATAATATT 240 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 225 TTTGTTTGGAGGCTTAAATCGCGCTTAAGGTGGTCTCGGAAGAGTGATCATAATAATATT 284 Query 241 CAGTGTAGTTATGATCTCCGGAGTTATCATCTTAACTTCGACGACGGTTGGTCTCGACGA 300 ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||| Sbjct 285 CAGTGTAGTTATGATCTCCGGAGCTATCATCTGAATTTCGACGACGGTTGGTCTCGCCGA 344 Query 301 CGGTGATTTTTAAATAAATAGACGTT 326 |||||||||| || || ||||||||| Sbjct 345 CGGTGATTTT-AATTACATAGACGTT 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15281395696 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5