BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948853
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43270.2 | Symbols: SPL2 | squamosa promoter binding protein... 1810 0.0
> AT5G43270.2 | Symbols: SPL2 | squamosa promoter binding protein-like
2 | chr5:17360305-17363773 REVERSE LENGTH=1621
Length=1621
Score = 1810 bits (980), Expect = 0.0
Identities = 1225/1334 (92%), Gaps = 54/1334 (4%)
Strand=Plus/Plus
Query 1 TTTGGTGGTCAGTGTGTCGGATGGAGTGTAATG-AGAAGCCATCGTTTCAATGGGAATTG 59
||||||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||
Sbjct 122 TTTGGTGGTCA--GTGTCTGATGGAGTGTAATGCA-AAGCCACCGTTTCAATGGGAATTG 178
Query 60 GAAAATTTGATATCTTTTGGTACTTCAT-CAGCTGAAATTCCTAGAAAGCTAAAACCAAT 118
||||| |||||||||||||| ||||| | |||||||| ||||||||||||||||||||||
Sbjct 179 GAAAACTTGATATCTTTTGGCACTTC-TACAGCTGAAGTTCCTAGAAAGCTAAAACCAAT 237
Query 119 GGAGTGGGAAATTGATGGGTTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCTGCAGT 178
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 238 GGAGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGC-TT--TGC--- 291
Query 179 AGCTTATGGTGGTAGTTCAGGTTCTGATCTAGCTAATGCTTTCTCTAAAAGCTCAAAGTC 238
| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 292 --C-TATGCTGGTAGTTCAGGTTCTGATATAGCTCATGCTTTCTCTAAAAGCTCAAAGTC 348
Query 239 AA----C--TAGTTCTTCATCAGCTGAAGTGAGAACACATAATTTTACATCAGAAGCTGG 292
|| | ||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||
Sbjct 349 AACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGG 408
Query 293 TGAAAGTCTTCCTGGAGAATTAGGCAGCAGTGAAGAGTTTGCAAAGGGAATTGATACTTC 352
|||||||||||| | | | | | | | ||||||||||| |||||||||||
Sbjct 409 TGAAAGTCTTCC--------T--G--G-A--G-A-A-TTTGCAAAGGGGATTGATACTTC 450
Query 353 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCAGTTCTCGGTTTAAAGCTTGGTAA 412
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 451 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAA 510
Query 413 ACGAACTTACTTTGAAGACTTTTGGGAAGTGGAAAATGCGAAAGGTTTGGGACTTCCAGT 472
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 511 ACGAACGTACTTTGAAGACTTTTGGGAAGTGGAGAATGCTAAAGGTTTGGGACTTCCAGT 570
Query 473 GAGC-CTTGCTTCGTCTTCTGTTTCTCCGGTGAAGAAATCGAAATCCATTCCTCAGAGGT 531
|| | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 571 GA-CTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGT 629
Query 532 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTCGATCTCTCATCAGCTAAAGACT 591
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 630 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACT 689
Query 592 ATCATCGGAAACACAGGATTTGTGAAAACCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 651
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 690 ATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 749
Query 652 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 809
Query 712 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 869
Query 772 ATCCTGGGAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 831
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 929
Query 832 TTATCCATCCAAGAAGTGAGGAAAAGTTTCTATGGCCAAGTTCGAAGCCCGTACCATCAA 891
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 930 TTATCCATCCAAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAA 989
Query 892 GAGGGTTAATGTCGCAACCTGCAAAGACCGAGACTTCCAATAAGCTGTTCACCGAGCACA 951
||| ||||||| |||||||||||||||| |||| |||| ||| | | |||||||
Sbjct 990 GAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATA--C----C---GAGCACA 1040
Query 952 GTAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAACCGAGTTATTCAATAAAG 1011
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1041 ATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAG 1100
Query 1012 AAAAGGTCACAATCTCTTCACACATGGGTACTTCTCAAGATCTTGATGGTGCTCTCTCTC 1071
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1101 AAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAGATCTTGATGGTGCTCTCTCTC 1160
Query 1072 TTCTGTCAAATTCAACATCATGGGTTTC--C-TCTGACCAACCAAGACGTTTTACCCTTG 1128
||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||
Sbjct 1161 TTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTG 1220
Query 1129 ATCACCATCCCACAAGCAACCTCCAACCTGTGGCTAACCGTTCTGCGACTCAACTCAATT 1188
||||||||||| |||||||||||||||| || ||| |||| |||||| ||||||||||||
Sbjct 1221 ATCACCATCCCTCAAGCAACCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATT 1280
Query 1189 CGGTGTCCGGCTATTGGCAGCCGGAACCACCAACAGTTGAGGGCCCGACCGCTCTGCATA 1248
| || |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1281 CAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCATA 1340
Query 1249 GAAACGGGGTAGGCCAGTTTAATGAAAACTGCTTCAGCTTGAACCAGTTTTATAACTGAA 1308
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1341 GAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAACTGAA 1400
Query 1309 AGT-GTATGCCTTT 1321
| | ||||||||||
Sbjct 1401 AATTGTATGCCTTT 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5