BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948855

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43260.1 | Symbols:  | chaperone protein dnaJ-related | chr5...   521    1e-147


> AT5G43260.1 | Symbols:  | chaperone protein dnaJ-related | chr5:17357377-17358082 
REVERSE LENGTH=706
Length=706

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 320/338 (95%), Gaps = 3/338 (1%)
 Strand=Plus/Plus

Query  1    TCTCTCTTCTTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCCACAGGTCTA  60
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  | 
Sbjct  76   TCTCTCTTATTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCTACAGGAATC  135

Query  61   AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCGGTCTTGGACCAAAAACCTATGGCTGGT  120
            |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct  136  AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCAGTCATGGACCAAAAGCCTATGGCTGGT  195

Query  121  CAATTCCCTCGTTGTCCGACTTGTAACGGTACGGGACGAGTCACGTGTTTCTGTTCTCGT  180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  196  CAATTCCCTCGTTGTCCGACTTGTAACGGTACTGGACGAGTCACGTGTTTCTGTTCTCGA  255

Query  181  TGGTCTGATGGCGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC  240
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  TGGTCCGATGGTGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC  315

Query  241  AATTGTGGTGGTTCTGGAACCGGTAGACCTTTACCGGCTCAGATTACGGTTCAACCACCG  300
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  316  AATTGTGGTGGTTCTGGAACTGGTAGACCTTTACCGGCTCAGATTACGGTTCAGCCACCG  375

Query  301  AATCGTCCTTATTGAT--T-CTCAAGAAATTTGTTTAC  335
            ||||||||||||||||  | |||||||||||||| |||
Sbjct  376  AATCGTCCTTATTGATGATTCTCAAGAAATTTGTATAC  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5