BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948886 Length=2515 Score E Sequences producing significant alignments: (Bits) Value AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:17... 3819 0.0 > AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:17315461-17321185 REVERSE LENGTH=2747 Length=2747 Score = 3819 bits (2068), Expect = 0.0 Identities = 2257/2348 (96%), Gaps = 14/2348 (1%) Strand=Plus/Plus Query 10 AGCTAATTTCAATGGATCCTTCAATTTTCAAGCTCCTCGAAGAAGACGAGGATGAATCGA 69 |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 32 AGCT-ATTTCAATGGATCCTTCAATTTTCAAGCTCCTTGAAGAAGATGAGGATGAATCGA 90 Query 70 TGCATTCAGGAGCTGACGTAGATGCGTTCCAAGCTGCTCTGAATCGTGATATTGAAGGTT 129 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 91 TGCATTCAGGAGCTGACGTAGACGCGTTCCAAGCTGCTCTGAATCGTGATATTGAAGGTT 150 Query 130 CTATGACTACTACACTACCGCTCGTGGCAAACCCAGGAAACAATCACTCTCCCAACCAGC 189 ||||||| ||| || |||| | |||| |||||||||||||||| || ||| ||| |||| Sbjct 151 CTATGACAACTTCAATACCCCACGTGACAAACCCAGGAAACAACCATTCTTCCAGGCAGC 210 Query 190 AGTTTGCGACATGGAAGAATGGTATTGGAGATTCTAATATCAATGTCCAGACGCAGCACA 249 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 211 AGTTTTCGACATGGAAGAATGGTATTGGAGATTCTAATATCAATGTCCAGACTCAGCATA 270 Query 250 GCCTTGAAAATACTCAAATGAAGGAGCAACAAGGATCAGCTACAGCTATAGAAAATCAAC 309 ||||||||| |||||| |||||||||||| ||||||| | | || |||||||||||| Sbjct 271 GCCTTGAAAGTACTCAGATGAAGGAGCAAGAAGGATC-G----A-CTTTAGAAAATCAAC 324 Query 310 ATCAACATGATTTGAAACACGCAAATGAACCTCATTTACAACACAACCAGCCTCAAGACC 369 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 325 ATCAACATGATTTGAAACGCGCAAATGAACCTCATTTACAACACAACCAGCCTCAAGACC 384 Query 370 TTCATCGAGCTGGTCAATTCTGGGAGAATCCCTCGCAGGTCCCCCAAACAACTGGGTTAC 429 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 385 TTCATCGAGCTGGTCAACTCTGGGAGAATCCCTCGCAGGTCCCCCAATCAACTGGGTTAC 444 Query 430 CGAGTT-CTGAAAAGAATCCTACTGGTAATGAATCAGATAGATCACATAATCAAGAGAGT 488 ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 445 CGA-TTAGTGAAAAGAATCCTACTGGTAATGAATCAGATAGATCCCATAATCAAGAGAGT 503 Query 489 GAATCTCAGTATATGAAACTGCAAAAGATGAGTAGTCAACAGGCTCGGGGAGTGGAACCG 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 GAATCTCAGTATATGAAACTGCAAAAGATGAGTAGTCAACAGGCTCGGGGAGTGGAACCG 563 Query 549 CCTGTTAACCCTATAAATGTTAACCCTATGAACCGCAACCCTAAGCAAGTACCATTTGCT 608 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 564 CCTGTTAACCCTATGAATGTTAACCCTATAAACCGCAACCCTAAGCAAGTACCATTTGCT 623 Query 609 GCTTTGCTTCCTACTTTAATGAACCAACTCGATAAAGATAGAGCACTGCAGCTCCGTACC 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 624 GCTTTGCTTCCTACTTTAATGAACCAACTCGATAAAGATAGAGCACTGCAGCTCCGTACC 683 Query 669 CTATATGCTAGACTTAAGAAAAATGAAATTCCCAAAGAGGGGTTCACACGACATATGAAG 728 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 684 CTATATGCTAGACTTAAGAAAAATGAAATCCCCAAAGAGGGGTTCACACGACATATGAAA 743 Query 729 GATATTGTAGGCGATCAGATGCTCAGGATGGCAGTTAGTAAACTCCAACAGGTGAACTAT 788 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 744 GATATTGTGGGCGATCAGATGCTCAGGATGGCAGTTAGTAAACTCCAGCAGGTGAACTAT 803 Query 789 AACCAGGGAAAAATTGGAATTCAAGCTCCTTCTACTGAAATCAATAATCAAAAATCTCAG 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 AACCAGGGAAAAATTGGAATTCAAGCTCCTTCTACTGAAATCAATAATCAAAAATCTCAG 863 Query 849 TCTGATCCTCGTGCAGTCCACCTTAACCAACTACCGTCCTCAGCTTCAGGCACCTTAGGC 908 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 864 TCTGATCCTCGTGCAGTCCATCTTAACCAACTACCGTCCTCAGCTTCAGGCACCTTAGGC 923 Query 909 AGTTCAGTTCCGGTACAGGGACTTACCAAACATCCGCAGCACCAGATGCAGCATCCACCA 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 AGTTCAGTTCCGGTACAGGGACTTACCAAACATCCGCAGCACCAGATGCAGCATCCACCA 983 Query 969 AGTTCTTTTTCTATGTATACCACCTCTGGTAGTTTTCACACATACCCGGGTCCAAACACC 1028 ||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||| Sbjct 984 AGTTCTTTTCCTATGTATACCACTTCTGGTAGTTTTCATTCATTCCCGGGTCCAAACACC 1043 Query 1029 AATGCTTCTGGTTCCTCGTTGAGGCCTCACCTTCATGATTCCCATATGAGACATGTGACA 1088 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1044 AATGCTTCTGGTTCCACGTTGAGACCTCACCTTCATGATTCCCATATGAGACATGTGGCA 1103 Query 1089 CATAACCAGCCTATGGGATCAACTGGTCTTGGAGGACCGCCCCAGTCGACCACAAACATG 1148 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1104 CATAACCAGCCTATGGGATCAACTGGTCTTGGAGGACCGCCCCAGTCTACCACAAACATG 1163 Query 1149 ATGACTATGCCCAAGTTTGAGAGGCCAAGTTCTGTAAATGATCCGAATAGGGTTCAAGGT 1208 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1164 ATGACTATGCCCAAGTTTGAGAGGCCAAGTTCTGTAAATGATCCGAGTAGGGTTCAGGGT 1223 Query 1209 GGCGCTACATCGCACTTCCAGAACAGCTCATC---GCCTCTAAATTCTGCACCTGGTCAA 1265 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1224 GGCGCTACATCGCACTTCCAGAACAGCTCATCATTGCCTCTAAATTCTGCACCTGGTCAA 1283 Query 1266 GGATCATCAGTGTCCAATGTAAAGCAGGAATTAGTTGATCAAAGTTTTGAAAAGAATAAT 1325 ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1284 GGATCATCAGTGTCCCACGTAAAGCAGGAATCAGTTGATCAAAGTTTTGAAAAGAATAAT 1343 Query 1326 GCAGCCTCAGTGACTTCGAATGAGGACTTAGAGAAGGAGTCCTCTAGAATGGTTTTATCC 1385 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1344 GCAGCCTCAATGACTTCGAATGAGGACTTAGAGAAGGAGTCCTCTAGAATGGTTTTATCC 1403 Query 1386 ACACCTAACAACATGGGGCCTGCAAGCTCTGTTTCTCCATCCATGACAACTCAACTAGAC 1445 || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1404 ACGCCTAACAACATGGCGCCTGCAAGCTCTGTTTCTCCTTCCATGACAACTCAACTAGAC 1463 Query 1446 GCTAGCACAACGATGAATTCTCGTGGCCCATTGGGAAGCTCTCAAGGAGGAG-TAAATGC 1504 || |||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 1464 GCCAGCACAACTATGAATTCTCGTGGCCCATTGGGAACCTCTCAAGGAGGAGCT-AATGC 1522 Query 1505 TAGGATGCCACCTAAAAAGCCTTCTGTTGGTCAGAAAAAACCTCTTGAGTCATTAGGTTC 1564 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1523 TAGGATGCCACCCAAAAAGCCTTCTGTTGGTCAGAAAAAACCTCTTGAGACATTAGGTTC 1582 Query 1565 TTCACCTCCACCACCAAGCAAGAAGCAAAAAGTAGCAGGGAATTCTATGGATCAAAGTAT 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1583 TTCACCTCCACCACCAAGCAAGAAGCAAAAAGTAGCAGGGAATTCTATGGATCAAAGTAT 1642 Query 1625 TGAACAGCTCAATGATGTCACTGCAGTCAGTGGTGTTAATCTCAGGGAAGAGGAAGAACA 1684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1643 TGAACAGCTCAATGATGTCACTGCAGTCAGTGGTGTTAATCTCAGGGAAGAGGAAGAACA 1702 Query 1685 ATTATTTTCTGGGGCCAAGGAAGATGGTCGTGTTTCCGAAGCATCTCGGAGAGTTGTGCA 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1703 ATTATTTTCTGGGGCCAAGGAAGATGGTCGTGTTTCCGAAGCATCTCGGAGAGTTGTGCA 1762 Query 1745 CGAAGAAGAAGAAAGATTAATCTTGCAGAAAAATCCTCTGCAGAGAAAGCTGGCGGAAAT 1804 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1763 CGAAGAAGAAGAAAGATTAATCTTGCAGAAGAATCCTCTGCAAAGAAAGCTGGCGGAAAT 1822 Query 1805 TATGGCGAAAGCTGGTTTAAAGCAGATAAGCAATGATGTCGAACGGTGCTTGTCTTTGTG 1864 |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1823 TATGGCTAAAGCCGGGTTAAAGCAGATAAGCAATGATGTCGAACGGTGCTTATCTTTGTG 1882 Query 1865 TGTGGAGGAAAGGATGCGAGGACTATTATCCCATATAATACGGCTGTCAAAGCAGCGGGT 1924 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1883 TGTGGAGGAAAGGATGCGAGGACTATTATCCCATATAATTCGGTTGTCAAAGCAGCGGGT 1942 Query 1925 TGATGCTGAGAAATCTAGACACCGGACTTTTATCACATCAGATATTCGGCTACAAATCAA 1984 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1943 TGATGCTGAGAAATCTAGGCACCGGACTTTTATCACATCAGATATTCGGCTACAAATCAA 2002 Query 1985 CGAAATGAATCAGAAGGTGAAGGAGGAATGGGAGAAGAAACAGGCAGAAGCAGAAAAGCT 2044 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 2003 CGAAATGAATCAGAAGGTGAAGGAAGAATGGGAGAAGAAACAGGCTGAAGCAGAAAAGCT 2062 Query 2045 GAAGAAACCGAGTGAGAGTGAAGAAGGTGATGGTGGAGTTGACAGTGAGAAGGAGAAAGA 2104 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2063 TAAGAAACCGAGTGAGAGTGAAGAAGGTGATGGTGGAGTTGACAGTGAGAAGGATAAAGA 2122 Query 2105 AGATAATCGTTCAAAGGGTGTGAAGGTAAATAAAGAAGATGACGACAAAATGAGAACGAC 2164 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 2123 AGATAATCGTTCAAAGGGTGTGAAGGGAAATAAAGAGGATGACGACAAAATGAGAACGAC 2182 Query 2165 GGCTGCAAATGTTGCTGCTCGTGCTGCTGTCGGAGGAGATGATGCGTTCTTGAAATGGCA 2224 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2183 AGCTGCAAATGTTGCTGCTCGTGCTGCTGTCGGAGGAGATGATGCGTTCTTAAAATGGCA 2242 Query 2225 ATTAATGGCTGAAGCTCGTCAGAAATCTGTATCTGAAGCTGGTAAAGATGGGAATCAGAA 2284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2243 ATTAATGGCTGAAGCTCGTCAGAAATCTGTATCTGAAGCTGGTAAAGATGGGAATCAGAA 2302 Query 2285 AACTACTTCAGGTGGAGGAAAGAACTCCAAAGACAGGCAAGATGGTGGACGAAGGTTTTC 2344 ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct 2303 AACTACTTCAGGTGGAGGAAAGAACTCCAAAGATAGACAAGATGGTGGACGACGGTTTTC 2362 Query 2345 TGGAACTG 2352 ||| |||| Sbjct 2363 TGGTACTG 2370 Score = 276 bits (149), Expect = 9e-73 Identities = 160/165 (97%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 2352 GGTGGTCGAAGAGTAGGGAAAAACCAAGGTTCGTCGCTTCAACCGAAAGTGGTGAGGACA 2411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2457 GGTGGTCGAAGAGTAGGGAAAAACCAAGGTTCGTCGCTTCAACCGAAAGTGGTGAGGACA 2516 Query 2412 ATCTCTGTGAAGGATGTGGTTGCGGTCCTTGAAAGAGAGCCGCAGATGTCCAAATCCACT 2471 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 2517 ATCTCTGTGAAGGATGTGGTTGCGGTCCTCGAAAGAGAGCCACAGATGTCCAAATCCACT 2576 Query 2472 CTAATGTATCGATTAATTCAATAGAAA-ACAGAATCATTATATTT 2515 || |||||||||||||||||||||||| | ||||||||||||||| Sbjct 2577 CTGATGTATCGATTAATTCAATAGAAAGA-AGAATCATTATATTT 2620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 124815354184 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5