BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948912
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42990.1 | Symbols: UBC18 | ubiquitin-conjugating enzyme 18 ... 854 0.0
AT1G45050.1 | Symbols: ATUBC2-1, UBC15 | Ubiquitin-conjugating ... 553 7e-157
> AT5G42990.1 | Symbols: UBC18 | ubiquitin-conjugating enzyme 18
| chr5:17243987-17245988 REVERSE LENGTH=789
Length=789
Score = 854 bits (462), Expect = 0.0
Identities = 490/504 (97%), Gaps = 0/504 (0%)
Strand=Plus/Plus
Query 3 TCTGTCTTCGTCTCCGCCATGACTAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG 62
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTCTCTTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG 126
Query 63 ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG 186
Query 123 TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACGGGAGCACCT 182
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACAGGAGCACCT 246
Query 183 GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTACCCT 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTATCCT 306
Query 243 ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCACTACATCCTCATATTTACAGC 302
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 307 ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGC 366
Query 303 AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT 426
Query 363 TCAGTCTGCATCAGCATTCTCTCGATGCTATCGAGTTCACCCGAAAAGCAACGCCCGACT 422
||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 427 TCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGCAACGCCCGACT 486
Query 423 GATAATGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG 482
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GATAACGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG 546
Query 483 TGGTTCCACGACGACAAGGTATAA 506
|||||||| ||||||||||| |||
Sbjct 547 TGGTTCCATGACGACAAGGTTTAA 570
> AT1G45050.1 | Symbols: ATUBC2-1, UBC15 | Ubiquitin-conjugating
enzyme family protein | chr1:17031281-17033198 FORWARD LENGTH=773
Length=773
Score = 553 bits (299), Expect = 7e-157
Identities = 437/503 (87%), Gaps = 12/503 (2%)
Strand=Plus/Plus
Query 6 GTCTTCGTCTCCGCCATGACTAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAGATC 65
|||| | ||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 42 GTCTCCATCTCCGCCATGACCAGCTCTTCCGCTCCTTCACGCAAGGCTTTAAGCAAGATC 101
Query 66 GCGTGTAATAGGTTACA-AAAGGAG-TTATCAGAGTGGCAAGTAAATCCACCGACTGGGT 123
|||||||||||||| || ||| ||| || || ||||||||| | ||||| || ||||| |
Sbjct 102 GCGTGTAATAGGTTGCAGAAA-GAGCTT-TCTGAGTGGCAATTGAATCCCCCCACTGGAT 159
Query 124 TTAAG-CACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACGGGAGCACCT 182
|| | |||| ||| ||||||||||||||||||||| ||| || || || ||||| ||
Sbjct 160 TT-CGTCACAAAGTCACTGATAATCTTCAAAAATGGACAATAGATGTTACCGGAGCTCCA 218
Query 183 GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTACCCT 242
|| || |||||||||||||| |||||| | ||||||||||| |||||| |||||||||||
Sbjct 219 GGGACACTTTACGCTAATGAGACTTATCAGCTTCAGGTTGAATTTCCTGAACATTACCCT 278
Query 243 ATGGAAGCTCCTCAGGTGA-TTTTTGTTCCACCAGCACCACT-ACATCCTCATATTTACA 300
|||||||| || ||||| | | |||||| | || ||||| | |||||| ||||| ||||
Sbjct 279 ATGGAAGCACCCCAGGT-AGTGTTTGTTTCTCCGGCACC-TTCACATCCACATATATACA 336
Query 301 GCAATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGA 360
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 337 GCAATGGACATATTTGTTTAGATATTCTATATGACTCATGGTCACCAGCAATGACAGTGA 396
Query 361 GTTCAGTCTGCATCAGCATTCTCTCGATGCTATCGAGTTCACCCGAAAAGCAACGCCC-G 419
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
Sbjct 397 ATTCAGTCTGCATCAGCATTCTTTCGATGCTATCAAGTTCACCCGCAAAGCAACGCCCTG 456
Query 420 ACTGATAATGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGG 479
| ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 457 -CGGATAACGATCGTTATGTGAAGAACTGTAAGAATGGGAGGTCTCCTAAGGAGACGAGG 515
Query 480 TGGTGGTTCCACGACGACAAGGT 502
||||||||||| |||||||||||
Sbjct 516 TGGTGGTTCCATGACGACAAGGT 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5