BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948913
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 | thi... 638 0.0
> AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 | thioredoxin
3 | chr5:17242607-17243912 FORWARD LENGTH=716
Length=716
Score = 638 bits (345), Expect = 0.0
Identities = 477/537 (89%), Gaps = 23/537 (4%)
Strand=Plus/Plus
Query 1 AACACAGAGAAGAAACAAAAATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTCG 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 149 AACACAGAGAAG--A-GAAAATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTTG 205
Query 61 AAGAATGGACCGAGAAGCTCAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATCGACT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 206 AAGATTGGACCGAGAAGCTCAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATAGACT 265
Query 121 TCACTGCAACATGGTGCCCACCTTGCCGTTTCATTGCACCCATCTTTGTTGAGTTGGCCA 180
||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||
Sbjct 266 TCACTGCAACATGGTGCCCACCTTGCCGTTTCATTGCACCCGTCTTTGCTGACTTAGCCA 325
Query 181 AGAAGCACCTAGACGTGGTGTTCTTCAAGGTTGATGTAGACGAATTGAACACTGTTGCTA 240
|||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 326 AGAAGCACCTCGACGTAGTCTTCTTCAAGGTCGATGTTGACGAATTGAACACTGTTGCTG 385
Query 241 AGGAATTTGACGTTCAGGCAATGCCAACGTTTATCTTCATGAAAGAAGGAGAGGTCAAGG 300
|||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 386 AGGAGTTTAAAGTTCAGGCAATGCCAACGTTTATCTTCATGAAAGAAGGAGAGATCAAGG 445
Query 301 ATACCGTGGTTGGAGCTGAC-AAAGATGAAATCATTGCCAAGCTCCTGAAGCACACTA-- 357
| || |||||||| |||| | ||||| |||||||||||||| ||| |||||||| |
Sbjct 446 AGACTGTGGTTGGTGCTG-CTAAAGAAGAAATCATTGCCAATCTCGAGAAGCACAAGACA 504
Query 358 GC-GTTGCTGCTGCTTGATTCGCTTT-CTCTCTT-CCTATGTTGCTAAAAC--GTTTGGT 412
| ||||||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||
Sbjct 505 GTTGTTGCTGCTGCTTGATTTGCTTTTCTCTCTTACCTATTTTGCTAAAATATGTTTGGT 564
Query 413 GTTTTAATAAATCCTT-GTTCGCCAGAGTCTTT-CACCTTGCTTGTGCTCT-ATGTGTGG 469
|||||||||||||||| ||||||| |||||||| |||||| |||||||| ||||||||
Sbjct 565 GTTTTAATAAATCCTTTGTTCGCCCGAGTCTTTTCACCTTAAATGTGCTCTTATGTGTGG 624
Query 470 TG---AATAAATGTTG---CAAACTCGAT-ATGTCGCAGCTATGCTAATTGTTCGTT 519
|| ||||||||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 625 TGGTGAATAAATGTTGTTGCAAACTTGATTAC-TCGCAGCTATGCTAATTGTTCGTT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5