BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949010
Length=3203
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 | chr5:17007389... 2290 0.0
AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 |... 582 6e-165
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclea... 224 4e-57
> AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 | chr5:17007389-17014796
FORWARD LENGTH=3458
Length=3458
Score = 2290 bits (1240), Expect = 0.0
Identities = 1416/1498 (95%), Gaps = 23/1498 (2%)
Strand=Plus/Plus
Query 1 TTCTTCACGAAAATTCTCCGATGGGAGTTCCGTCGTTCTACAGATGG-TTAATCCAGAGG 59
|||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 105 TTCTTCACGATAATTTTCCGATGGGAGTTCCGTCGTTCTACAGATGGCTT-ATCCAGAGG 163
Query 60 TATCCATTGATTATACAACAAGTCATTGAAGAAGAACCACTCGAAGTTAAT---GGCGGC 116
|||||||||| ||||||| |||| ||||||||||| ||||||||||||||| ||||||
Sbjct 164 TATCCATTGACTATACAAGAAGTTATTGAAGAAGAGCCACTCGAAGTTAATGGCGGCGGC 223
Query 117 GTCACGATTCCAATCGATACAAGTAAACCTAATCCTAATGGTTACGAGTATGATAATCTC 176
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 224 GTCACGATTCCAATCGATTCAAGCAAACCTAATCCTAATGGTTACGAGTATGACAATCTT 283
Query 177 TATCTCGACATGAACGGAATCATTCATCCTTGTTTCCATCCTGAAGATAAACCTTCTCCT 236
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 284 TATCTCGACATGAACGGAATCATTCATCCATGTTTCCATCCTGAAGACAAACCTTCTCCA 343
Query 237 ACTACGTTTACGGAGGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 296
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 ACTACATTTACGGAAGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 403
Query 297 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 463
Query 357 AATCAACAGAGAGCTAGACGATTTAGAGTTGCAAAAGATGCAGCTGAAGCAGCAGCTGAA 416
|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||
Sbjct 464 AATCAACAGAGAGCTAGAAGGTTTAGAGCTGCTAAAGATGCAGCTGAAGCAGCAGCTGAA 523
Query 417 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAATTGCCTCCTAAAGTAGAT 476
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 524 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAGTTGCCTCCTAAAGTGGAT 583
Query 477 TCTCAAGTTTTTGACTCTAATGTTATAACTCCTGGAACAGAGTTCATGGCTACTCTGTCG 536
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 584 TCTCAAGTTTTTGACTCTAATGTTATTACTCCTGGAACAGAGTTCATGGCTACTCTGTCC 643
Query 537 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 703
Query 597 AAGGTTATACTTTCGGATGCTAATGTTCCTGGTGAGGGGGAACACAAGATCATGTCGTAC 656
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 704 AAGGTTATACTCTCGGATGCTAATGTTCCTGGCGAGGGGGAACACAAGATCATGTCATAC 763
Query 657 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGCCTATATGGT 716
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 764 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGTCTATATGGT 823
Query 717 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 883
Query 777 CGTGAGGTTGTTTTCTTTCCTGGAGAGAAAGACAAATGCTTCTTGTGTGGTCAAGTTGGG 836
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 884 CGTGAGGTTGTTTTCTTTCCTGGAGAGGAAGGCAAATGCTTCTTGTGTGGTCAAGAGGGG 943
Query 837 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGGCAGGAGAAATGCTTGATGAT 896
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 944 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGACAGGAGAAATGCTTGATAAT 1003
Query 897 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATACGAGTTTGTCAATATATGGATACTTCGA 956
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1004 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATATGAGTTTGTCAATATATGGATACTACGA 1063
Query 957 GAGTATTTGGAACACGACATGCAGATTCCTAACCAGCGATCGaaaaaaaaTTTGGACCGC 1016
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 1064 GAGTATTTGGAACACGACATGCAGATTCCTGG--AGC-A---AAAAAAAATTTGGACCGC 1117
Query 1017 TTAATTGATGACTTCATCTTCATTTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1118 TTAATTGATGACTTCATCTTCATCTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1177
Query 1077 CCTACGCTAGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAA 1136
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CCTACGCTCGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAG 1237
Query 1137 TTTAGATCAGCaaaaaaaTACTTGACCGATTCAAGCAAGCTGAACTTAAGAAATGTGGAG 1196
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1238 TTTAGATCAGCAAAAAAATACTTAACCGATTCAAGCAAGCTGAACTTAAGAAATGTTGAG 1297
Query 1197 CGTTTCATCAAGGCCGTTGGGACCTATGAAAATCAGATATTTCAGAAGAGAGCACAAGTA 1256
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1298 CGTTTCATCAAGGCCGTTGGGATGTATGAAAATCAAATATTTCAGAAGAGAGCACAAGTA 1357
Query 1257 CAAAAGAGGCAATCAGGAAGGTTTATTCGTGACAAAGCTCGTGAAAAAGCTCGTGACAGT 1316
|| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1358 CAGCAGAGGCAATCAGAAAGGTTTCGTCGTGACAAAGCTCGTGACAAAGCTCGTGACAAT 1417
Query 1317 G-T--T--CAA-GC--AAGCA-G-A-A-AATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1364
| | | ||| || ||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 1418 GCTCGTGACAATGCTCAAGCAAGCAGACAATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1477
Query 1365 CTAGATGAAGTGTCTGATTCATTGCATTCCTCACCTCCACGAAAACATTTGCGTTTGTCT 1424
||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||
Sbjct 1478 CTAGATGAAGTGTCTGATTCATTGCATTCATCACCTTCACGAAAATATTTGCGTCTGTCT 1537
Query 1425 TTGGATAATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCTTCAAAGCTGAAG 1482
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1538 TTGGATGATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCCTCAAAGCAGAAG 1595
Score = 1118 bits (605), Expect = 0.0
Identities = 760/834 (91%), Gaps = 14/834 (2%)
Strand=Plus/Plus
Query 2364 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTCCATGTTTCAGC 2423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2372 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTTCATGTTTCTGC 2431
Query 2424 TCCCCAGTCGAGGGCATGGAAGATGTTTTAGCCAATCATGTCATTTGTGCCATATACAAA 2483
||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2432 TCCACAGTCGAGGGTATGGAAGATGTTTTAACCAATCAAGTCATTTGTGCCATATACAAA 2491
Query 2484 CTTCCAGATGATATCAGAGGCAGCGAGATTACTCATCAAATTCCAACATTGAAAATCCCT 2543
|||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||
Sbjct 2492 CTTCCAGAAGATATCAGAGGCAGTGAGATTACTCATCAGATTCCAAGATTGGCAATCCCT 2551
Query 2544 AAACAGACTATA-CATCTAGTGGATTTGAAAGCTGAAGGTCTTCTCTGGCATGAAGATGG 2602
||| |||||||| | |||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 2552 AAAAAGACTATATC-TCTAGTGGATTTGAAATCTGGAGGTCTTCTATGGCATGAAGATGG 2610
Query 2603 TGACAGAAGACGAGCTCCTGCAAAAGTTaaaaaaaTCAAGAGGTATAATCCCGAAGGATC 2662
|||| |||| |||||||| |||| |||| ||||||||||||||||||||| ||||||||
Sbjct 2611 GGACAAAAGAAGAGCTCCTCCAAAGGTTATAAAAATCAAGAGGTATAATCCAGAAGGATC 2670
Query 2663 TATTTCTGGGAATAGGCTTGGGAAGGCAGCACACAGGCTTGTGTTGCAAACAATAAATGC 2722
|||||||||| |||||||||||||||| | || || |||||||||||||||||||||||
Sbjct 2671 TATTTCTGGGGGTAGGCTTGGGAAGGCATCTCATAGACTTGTGTTGCAAACAATAAATGC 2730
Query 2723 CCAACCTGAT-AGTACGCACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2781
|||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2731 CCAACCTGATTA-TATGAACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2789
Query 2782 AGAACCAACGAGTGCCGAAAA-GAATCCC-AGCATTTCGAGAAAATGGGATACAATGGAT 2839
||||| ||||||||||||||| || |||| | ||||| ||| |||||||||||||||||
Sbjct 2790 AGAACGAACGAGTGCCGAAAAAGA-TCCCTA-CATTTAAAGATAATGGGATACAATGGAT 2847
Query 2840 AAGCCCTCC---GACTCAAATCACTCCGAAGAAGATGAAAAGCCCTGAAAGTCAAAAGAC 2896
||||||||| || |||||||||||||||||||||||| |||||| |||| |||||| |
Sbjct 2848 AAGCCCTCCTCCGAGTCAAATCACTCCGAAGAAGATGAATAGCCCTCAAAGGCAAAAGGC 2907
Query 2897 TAGGAAGAAGAATGATACCCCTCAGAGTCGAGACAAATCGAAGAAGCTGAAAAGCTCTCT 2956
| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2908 TTGGAAGAAGGATGAAACCCCTCAGAGTCGAGAGAAATCGAAGAAGCTGAAAAGCTCTCT 2967
Query 2957 GAAAGTAATCCCTTTGAAGATGAAGAAAACTAAAAACCCTCAGAGAGATTTCACTCGGGG 3016
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 2968 GAAAGTAAACCCTTTGAAGATGAAGAAAACTAAAAGCCCTCAGAGAGAGTTCACTCGAGA 3027
Query 3017 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACCCACTAAGGCGGAGAGGCAGGCGAA 3076
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 3028 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACTCACTAAGGCACAGAGGCAGGTGAA 3087
Query 3077 ACACATTCGCATGATGgaagaggcgaaaaggataaaagagaggaaaaaagagaagtattt 3136
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 3088 ACACATACGCATGATGGAAGAGGCGAAAATGATAAAACAGAGGAAAAAAGAGAAGTATTT 3147
Query 3137 aagaaagaaagccaaatatgcacaaa-agGA--TCCCAACACAGCTTGAGCTTC 3187
||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 3148 AAGAAAGAAAGCCAAATATGCACAAGGAGCTCCTCCCAAAACAGCTTGAGCTTC 3201
Score = 1112 bits (602), Expect = 0.0
Identities = 700/748 (94%), Gaps = 4/748 (1%)
Strand=Plus/Plus
Query 1620 GAACTAGATAACGGAGAAGACTTAAAGTTTAAGCTTAAGAAACTGCTGCGGGATAAATCT 1679
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1595 GAACTAGATAACGAAGAAGACTTAAAGTTTAAGCTTAAGAAACTACTGCGGGATAAAGGT 1654
Query 1680 GATGTGTTAAGCTCAGGAAAGGGAGAACAAGATAAGGTTAAGCTAGGTGCAA-CAGGATG 1738
|||| ||| || |||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 1655 GATGGGTTCAGGTCAGGAAATGGAGAACAAGATAAGGTTAAGCTAAAT-AAAGTAGGATG 1713
Query 1739 GAGGGAAAGATACTATGAAGAGAAATTCACAGCTAAGTCTGCCGAGGAAATGGAACTAAT 1798
||| || ||||| || |||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1714 GAGAGAGAGATATTACGAAGAGAAATTCGCAGCTAAGTCTGTGGAGGAAATGGAACAAAT 1773
Query 1799 ACGCAGAGATGTTGTTTTGAAGTATACCGAAGGTCTTTGTTGGATAATGCATTATTATTA 1858
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1774 ACGCAGAGATGTTGTTTTGAAGTACACAGAAGGTCTTTGTTGGATAATGCATTATTATTA 1833
Query 1859 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1893
Query 1919 TCTCAAGGGCCTTGATAGCCTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACC-TT 1977
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1894 TCTCAAGGGCCTTGAGAAACTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACCATT 1953
Query 1978 TCAATCAACTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCGGAGTGCTATA 2037
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1954 T-AATCAGCTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCAGAGTGCTATA 2012
Query 2038 GGACATTGATGACAGATCCAGCTTCGCCTATAGCTGATTTTTATGCTGCTGATTTTGAGA 2097
|| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 2013 GGTCATTGATGACAAATCCAGATTCGCCTATAGCTGACTTTTATCCTGCTGATTTTGAGA 2072
Query 2098 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGACG 2157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2073 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGAAG 2132
Query 2158 AAAGGCGTCTTCTGGAGGCAGCTGCACTAGTGGAGAAATCACTGACGAACGAAGAAATTC 2217
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2133 AAAAGCGTCTTCTGGAGGCAGCTGCGCAAGTGGAGAAATCACTGACGAACGAAGAAATTC 2192
Query 2218 GAAGAAACAGTGTGTTGTTTGACATGCTGTTTGTTGTTGCATCTCATCCCCTTGCTGAAC 2277
|||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||| |||||
Sbjct 2193 GAAGAAACAGTGCGTTGTTTGACATGCTCTTTGTGGTTGCTTCTCATCCCCTTGGTGAAC 2252
Query 2278 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGAGCAACTATCA 2337
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2253 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGTGCAACTATCA 2312
Query 2338 TCGAGAAAATTGACCCTGGACTAAGTGA 2365
| || |||||||||||||||||||||||
Sbjct 2313 TTGAAAAAATTGACCCTGGACTAAGTGA 2340
> AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3
| chr1:28408147-28415117 FORWARD LENGTH=3497
Length=3497
Score = 582 bits (315), Expect = 6e-165
Identities = 916/1198 (76%), Gaps = 73/1198 (6%)
Strand=Plus/Plus
Query 114 GGCGTCACGATTCCAATCGATACAAGTAAACCTAATCCTAA-TGGTTACGAGTATGATAA 172
||| ||| |||||| | ||||| ||||||||||| ||||| | ||| || |||||
Sbjct 233 GGCATCAAGATTCCTGTGGATACTAGTAAACCTAACCCTAACAACCT-CGAATACGATAA 291
Query 173 TCTCTATCTCGACATGAACGGAATCATTCATCCTTG-TTTCCATCCTGAAGATAAACCTT 231
||| ||||||||||||||||| || || |||||||| ||| || || ||||||| || |
Sbjct 292 TCTTTATCTCGACATGAACGGGATTATCCATCCTTGCTTT-CACCCCGAAGATAGGCCAT 350
Query 232 CTCCTACTACGTTT-ACGGAGGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTT 290
|||| ||||| ||| | |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 351 CTCCAACTACCTTTGA-GGAGGTGTTTCAGTGTATGTTTGATTACATTGATAGGCTTTTC 409
Query 291 GTTATGGTTCGACCTCGGAAGCT-CT-TATTCATGGCTATTGATGGTGTTGCTCCAAGAG 348
|| ||||| || || ||||| | || || | ||||||||||||||||||||||||||||
Sbjct 410 GTGATGGTACGGCCAAGGAAGTTACTCTA-T-ATGGCTATTGATGGTGTTGCTCCAAGAG 467
Query 349 CTAAAATGAATCAACAGAGAG-CTAGACGATTTAGAGT-TGCAAAAGATGCAGCTGAAGC 406
||||||||||||||||||| | ||||||| |||||| | ||| ||||||||| | || ||
Sbjct 468 CTAAAATGAATCAACAGAG-GTCTAGACGGTTTAGA-TCTGCTAAAGATGCATCGGATGC 525
Query 407 AGCAGCTGAAGAAGAGCAG-CTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAA-ATTGCCT 464
||| ||||||||||| || || || || ||||||||||| || ||| |||| | | |||
Sbjct 526 AGCTGCTGAAGAAGAA-AGGCTACGAGAGGAGTTTGAGAGGGA-GGGTAGAAGACTCCCT 583
Query 465 CCTAAAGTAGATTCTCAAGTTTTTGACTCTAATGTTATAACTCCTGGAACAGAGTTCATG 524
|||||||| || |||||||| ||||| ||||||||||| || |||||||| || ||||||
Sbjct 584 CCTAAAGTGGACTCTCAAGTGTTTGATTCTAATGTTATTACACCTGGAACGGAATTCATG 643
Query 525 GCTACTCTGTCGT-TTGCGTTGCGATACTACATTCACGTTAGACTAAATTC-TGATCCTG 582
| | |||||| | ||||| ||| ||| || | ||| ||||||| ||| | |||| ||
Sbjct 644 GGTGTTCTGTC-TATTGCGCTGCAATATTATGTACACCTTAGACTTAAT-CATGATGTTG 701
Query 583 GGTGGAAAAATATTAAGGTTATACTTTCGGATGCTAATGTTCCTGGTGAGGGGGAACACA 642
| ||||||||||| ||||| || ||||| || || |||||||| ||||| || || || |
Sbjct 702 GTTGGAAAAATATCAAGGTCATCCTTTCAGACGCAAATGTTCCAGGTGAAGGAGAGCATA 761
Query 643 AGATCATGTCGTACATACGT-TGTAATAAGAAC-CATCCTGGTTATAACCCAAACACTCA 700
| |||||||| ||||| ||| | | | ||||| | |||||||| | |||||||||| |
Sbjct 762 AAATCATGTCATACATTCGTCT-TCA-AAGAAATCTTCCTGGTTTTGACCCAAACACACG 819
Query 701 TCATTGCCTATATGGTTTGGACGCCGATTTGATCATGCTGT-CTTTGGCCACCCACGAAA 759
|||||| | ||||| |||| || || |||| ||| || ||| ||| ||||| |||
Sbjct 820 GCATTGCTTGTATGGACTGGATGCTGACCTGATTATGTTGGGCTT-GGCGACCCATGAAG 878
Query 760 TTCATTTTTCAATCCTTCGTGAGGTTGTTTTCTTTCCTGGAGAGAAAGACAAATGCTTCT 819
||||||||||||| ||||| ||||| || | | ||||||| || | || | |||||||
Sbjct 879 TTCATTTTTCAATTCTTCGAGAGGTGGTCTACACTCCTGGACAGCAGGAGAGGTGCTTCT 938
Query 820 TGTGTGGTCAAGTTGGGC-ACCGAGCAGCAGATTGTGAGGGAAAGAT-AAAGAGGAAGGC 877
||||||||||| | |||| | || || ||||||| ||||| | ||||| || |||
Sbjct 939 TGTGTGGTCAAAT-GGGCCATTTTGCTTCAAATTGTGAAGGAAA-ACCAAAGAAGAGGGC 996
Query 878 AGGAGAAATGCTTGATGATACTGAGGC-A-G-A--TG-TTGTGGTGAAGAAGCCATA-CG 930
||||||| | || ||||| | |||| | | | || || || | || |||||||| |
Sbjct 997 AGGAGAA-T-CT-GATGAGAA--AGGCGATGGAAATGATTTTG-TCAAAAAGCCATATC- 1049
Query 931 AGTTTGT-CAATATATGGATACTTCGAGAGTATTTGGAACACGACATGCAG-ATTCCTAA 988
||||| | || ||| ||| | ||| |||| || |||| | || ||| || ||||| ||
Sbjct 1050 AGTTTCTACA-TATCTGGGTTCTTAGAGAATACCTGGAGCTTGAGATG-AGGATTCCCAA 1107
Query 989 CC-AGCGATC-GaaaaaaaaTTTGGACCGC-TTAATTGATGACTTCATCTTCATTTGTTT 1045
|| | | || || | | | | || ||| || ||||||| || |||||||| |||||
Sbjct 1108 CCCACC-ATTTGAGATTGA-TCTAGAGCGCATTG-TTGATGATTTTATCTTCATATGTTT 1164
Query 1046 -TTTCGTTGGG-AATGATTTCCTGCCACATATGCCTACGCTAGAGATACGGGAGGGTGCT 1103
||| || ||| ||||| ||| | ||||||||||| || ||||||| || |||||||||
Sbjct 1165 CTTT-GT-GGGCAATGACTTCTTACCACATATGCCCACATTAGAGATTCGAGAGGGTGCT 1222
Query 1104 ATAGAACT-GCTGATGTCTGTGTACAAGAATAAATTTAGATCAGCaaaaaaaTACTTGAC 1162
|| |||| ||| ||| |||| |||||||| ||||| | || | ||||| ||
Sbjct 1223 ATC-AACTTGCTTATGGCTGTTTACAAGAAGGAATTTCGGTCTTTTGACGGCTACTTAAC 1281
Query 1163 CGATTCAAGCAAGCTGAACTTAAGAAATG-TGGAGC-GTTTCAT-CAAGGCCGTTGGGAC 1219
||| |||||| || |||| | | | |||| | |||| || || ||| ||||| |
Sbjct 1282 TGATGGGTGCAAGCCAAATTTAA-AGAGGGTGGAACAGTTT-ATTCA-GGCTGTTGG-AT 1337
Query 1220 C-TATGAAAATCAGATATTTCAGAAGAGAGCACAAGTA-CAAAAGAGGCAATCAGGAA 1275
| | |||| || ||||||||||||| ||||| || | | || |||||||| | ||||
Sbjct 1338 CGTTTGAAGATAAGATATTTCAGAAAAGAGC-CATGCAACATCAGAGGCAAGC-GGAA 1393
> AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease
4 | chr1:20350191-20356916 FORWARD LENGTH=3219
Length=3219
Score = 224 bits (121), Expect = 4e-57
Identities = 526/715 (74%), Gaps = 54/715 (8%)
Strand=Plus/Plus
Query 143 ACCTAATCCTAATGG-TTACGAGTATGATAATCTCTATCTCGACATGAACGGAATCATTC 201
|||||| ||||| || || ||| | ||||||| | |||||||| ||||| || |||||||
Sbjct 232 ACCTAACCCTAACGGCTT-CGAATTTGATAATTTGTATCTCGATATGAATGGTATCATTC 290
Query 202 ATCCTTGTTTCCATCCTGAAGATAAA-CCTTCTCCTACTACGTTTACG--GAGGTGTTTC 258
||||||||||||||||||||| ||| ||| | ||| | |||| ||| || || |||
Sbjct 291 ATCCTTGTTTCCATCCTGAAGG-AAAGCCTGCACCTGCCACGT--ACGATGATGTATTTA 347
Query 259 AATGTATGTTCGATTACATTGAT-AGGCTTTTTG-TTATGGTTCGACCTCGGAAGCT-CT 315
||| ||||| || |||||||| | |||||| || | || || || ||||| | ||
Sbjct 348 AATCAATGTTTGAGTACATTGACCAT-CTTTTTACTT-TAGTGCGTCCGAGGAAGATTCT 405
Query 316 T-ATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAA-ATGAATCAACAGAGAGCTAG 373
| ||| ||||||| ||||| ||||| || ||||| ||| |||||||| ||| | || |
Sbjct 406 TTATT--TGGCTATAGATGGAGTTGCGCCGAGAGC-AAAGATGAATCAGCAGCGTTCTCG 462
Query 374 ACGATTT-AGAGTTGCAAAAGATGCAGCTGAAGCAGCAGCTGAAGAAGAGCAGCT-GCGG 431
||| ||| |||| |||||| || ||||| || || | |||||| |||||| || | | |
Sbjct 463 ACG-TTTCAGAGCTGCAAAGGACGCAGCAGAGGCTGAAGCTGAGGAAGAG-AGGTTGAGA 520
Query 432 GAAGAGTTTGAGA-GAGAAGGGAAGAAAT-T-G-CCTCCTAAAGTAGATT-CTCAAGTTT 486
|||| ||||||| | || ||| |||| | | || | ||||| ||| || || |
Sbjct 521 AAAGATTTTGAGATG-GA-GGGCC-AAATCTTGTCCGC-TAAAG-AGAAAGCTGAAACCT 575
Query 487 TTGACTCTAATGTTATAACTCCTGGAACAGAGTTCATGGCTACT-CTGTC-GTTTGCG-T 543
||| || ||||| || |||||||| || || ||||||| | ||||| || || |
Sbjct 576 GTGATTCAAATGTCATTACTCCTGGGACCCCTTTTATGGCTA-TACTGTCAGTC-GCTCT 633
Query 544 TGC-GATACTACATTCACGT-TAGACTAAATTC-TGATCCTGGGTGGAAAAATATTAAGG 600
| | | || ||||| || | ||| |||| | | | ||||| |||| | || ||||||
Sbjct 634 T-CAG-TATTACATCCAA-TCTAGGTTAAAC-CATAACCCTGGCTGGAGATATGTTAAGG 689
Query 601 TTATACTTTCGGATGCTAATGTTCCTGGTGAGGGGGAACACAAGATCATGTCGTACATAC 660
| || ||||| ||| | |||||||| || || || ||||||||||| ||||| ||||| |
Sbjct 690 TAATTCTTTCTGATTCAAATGTTCCGGGAGAAGGAGAACACAAGATAATGTCATACATTC 749
Query 661 GT-TGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGCCTATATGGTTTG 719
|| | || || | |||||||| | | ||||| || | ||||| ||||||||| ||
Sbjct 750 GTCTCCAACGT-AATCTTCCTGGTTTTGATCCAAATACACGGCATTGTCTATATGGTCTG 808
Query 720 GACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTTC-G 778
|| || |||||||| ||||| || || || || || ||| |||| ||||| ||| || |
Sbjct 809 GATGCAGATTTGATAATGCTCTCCTTAGCTACACATGAAGTTCACTTTTCCATC-TTAAG 867
Query 779 TGAGGTTGTTTTCTTTCC-TGGAG-AGAAAGACAAATGCTTCT-TGTGTGGTCAA 830
|||||| | ||| || ||| | || |||| |||||||| | ||||||| |||
Sbjct 868 AGAGGTTATCA-CTTACCCTGG-GCAGCAAGAGAAATGCTT-TGTGTGTGGACAA 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159330210968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5