BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949071
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42300.1 | Symbols: UBL5 | ubiquitin-like protein 5 | chr5:1... 377 2e-104
> AT5G42300.1 | Symbols: UBL5 | ubiquitin-like protein 5 | chr5:16912333-16913930
REVERSE LENGTH=610
Length=610
Score = 377 bits (204), Expect = 2e-104
Identities = 224/234 (96%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 10 GAGCGAAGAAGATGATCGAGGTGGTTCTCAACGATCGACTAGGGAAAAAAGTTAGGGTTA 69
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 88 GAGCGAAGAAGATGATCGAGGTGGTTCTCAACGATCGTTTAGGGAAAAAAGTTAGGGTGA 147
Query 70 AGTGTAACGAAGATGACACAATCGGTGATCTGAAGAAGCTTGTTGCGGCACAAACCGGAA 129
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 148 AGTGTAACGATGATGACACGATCGGTGATCTGAAGAAGCTTGTCGCGGCACAAACCGGAA 207
Query 130 CACGAGCGGAGAAGATCCGAATTCAGAAGTGGTACAACATCTACAAGGATCATATCACTC 189
||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 208 CACGAGCCGAGAAGATCAGAATTCAGAAGTGGTACAACATCTACAAGGATCACATCACTC 267
Query 190 TCAAGGACTATGAGATTCATGACGGCATGGGTCTTGAGCTTTACTACAACTAGG 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 268 TCAAGGACTATGAGATCCATGACGGCATGGGTCTTGAGCTTTACTACAACTAGG 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11963724262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5