BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949102 Length=551 Score E Sequences producing significant alignments: (Bits) Value AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF co... 817 0.0 > AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | chr5:16854191-16855645 REVERSE LENGTH=949 Length=949 Score = 817 bits (442), Expect = 0.0 Identities = 512/545 (94%), Gaps = 8/545 (1%) Strand=Plus/Plus Query 14 AAAACCAAATGTCGACGGTGAGAAAAATCACTCTAAAAAGCTCCGATGGCGAAAACTTCG 73 |||||| ||||||||||||||||||||||||||| || || || |||||||||||||||| Sbjct 123 AAAACC-AATGTCGACGGTGAGAAAAATCACTCTTAAGAGTTCGGATGGCGAAAACTTCG 181 Query 74 AAATTGACGAAGCGGTGGCGCTAGAATCACAAACCATCAAGCATATGATTGAAGACGACT 133 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 182 AAATTGACGAAGCGGTGGCGCTAGAGTCACAAACCATCAAACATATGATTGAAGATGACT 241 Query 134 GTGCCGATAATGGTATCCCTCTCCCTAATGTCACCAGCAAAATCCTTTCGAAGGTGATTG 193 || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 242 GTACCGATAATGGTATCCCTCTCCCTAATGTCACAAGCAAGATCCTTTCGAAGGTGATTG 301 Query 194 AGTACTGTAAGAAACATGTCGAAGCTGCTGCGAAATCCGAAACCACCGCCGATGCTGCTG 253 |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 302 AGTACTGTAAGAGACATGTCGAAGCTGCTGAGAAATCCGAAACCACGGCCGATGCTGCTG 361 Query 254 CTG---CTACT---ACCACCGTCGCGTCGGGTTCTAGTGACGAAGATCTTAAGACTTGGG 307 ||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 362 CTGCTACTACTACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGG 421 Query 308 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAATT 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 422 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAACT 481 Query 368 ACCTGAATATCAAGGGACTGTTGGACTTGACCTGCCAAACAGTGGCCGATATGATTAAAG 427 || |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 482 ACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACAGTGGCTGATATGATTAAAG 541 Query 428 GTAAAACCCCAGAAGAAATCCGCAAGACTTTCAATATCAAGAACGACTTCACGCCAGAGG 487 | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 542 GAAAAACCCCAGAAGAAATCCGTAAGACGTTCAATATCAAGAACGACTTCACGCCAGAGG 601 Query 488 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCATTTGAATGAATAAAAATGAAGACCT 547 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 602 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCGTTTGAATGAAGAAAAATGAAGACCT 661 Query 548 -GGTT 551 |||| Sbjct 662 AGGTT 666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26423161322 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5