BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949102

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF co...   817    0.0  


> AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF 
complex subunit SKP1/ASK1 family protein | chr5:16854191-16855645 
REVERSE LENGTH=949
Length=949

 Score =  817 bits (442),  Expect = 0.0
 Identities = 512/545 (94%), Gaps = 8/545 (1%)
 Strand=Plus/Plus

Query  14   AAAACCAAATGTCGACGGTGAGAAAAATCACTCTAAAAAGCTCCGATGGCGAAAACTTCG  73
            |||||| ||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct  123  AAAACC-AATGTCGACGGTGAGAAAAATCACTCTTAAGAGTTCGGATGGCGAAAACTTCG  181

Query  74   AAATTGACGAAGCGGTGGCGCTAGAATCACAAACCATCAAGCATATGATTGAAGACGACT  133
            ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct  182  AAATTGACGAAGCGGTGGCGCTAGAGTCACAAACCATCAAACATATGATTGAAGATGACT  241

Query  134  GTGCCGATAATGGTATCCCTCTCCCTAATGTCACCAGCAAAATCCTTTCGAAGGTGATTG  193
            || ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  242  GTACCGATAATGGTATCCCTCTCCCTAATGTCACAAGCAAGATCCTTTCGAAGGTGATTG  301

Query  194  AGTACTGTAAGAAACATGTCGAAGCTGCTGCGAAATCCGAAACCACCGCCGATGCTGCTG  253
            |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  302  AGTACTGTAAGAGACATGTCGAAGCTGCTGAGAAATCCGAAACCACGGCCGATGCTGCTG  361

Query  254  CTG---CTACT---ACCACCGTCGCGTCGGGTTCTAGTGACGAAGATCTTAAGACTTGGG  307
            |||   |||||   |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  362  CTGCTACTACTACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGG  421

Query  308  ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAATT  367
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  422  ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAACT  481

Query  368  ACCTGAATATCAAGGGACTGTTGGACTTGACCTGCCAAACAGTGGCCGATATGATTAAAG  427
            || |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct  482  ACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACAGTGGCTGATATGATTAAAG  541

Query  428  GTAAAACCCCAGAAGAAATCCGCAAGACTTTCAATATCAAGAACGACTTCACGCCAGAGG  487
            | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  542  GAAAAACCCCAGAAGAAATCCGTAAGACGTTCAATATCAAGAACGACTTCACGCCAGAGG  601

Query  488  AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCATTTGAATGAATAAAAATGAAGACCT  547
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  602  AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCGTTTGAATGAAGAAAAATGAAGACCT  661

Query  548  -GGTT  551
             ||||
Sbjct  662  AGGTT  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26423161322


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5