BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949111 Length=1279 Score E Sequences producing significant alignments: (Bits) Value AT5G42130.1 | Symbols: | Mitochondrial substrate carrier famil... 1941 0.0 > AT5G42130.1 | Symbols: | Mitochondrial substrate carrier family protein | chr5:16835299-16836839 REVERSE LENGTH=1541 Length=1541 Score = 1941 bits (1051), Expect = 0.0 Identities = 1205/1281 (94%), Gaps = 3/1281 (0%) Strand=Plus/Plus Query 1 AAGCTT-CACCCAAATCAGCAATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCA 59 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 9 AAGCTTCCACCCAAATCAACCATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCT 68 Query 60 CCGAATCTTAATCACTGCCATTTTCCCAACGATTTCAATTCCCTCTTCACTCATTTCTCC 119 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 69 CCAAATCTTAATCACTGCCATTTTCCCAACGAGTTCAATTCTCTCTTCACTCATTTCTCC 128 Query 120 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACCCAAAACCAAATTCTCT 179 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 129 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACTCAAAACCAAATCCTCT 188 Query 180 AAAAAATCAACAAAATTTCCAGCAAATTTCAGAAGATCCGACCCACTATTTGCATCAACA 239 ||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 189 CAAAAACCCCCAAAATTTTCAGCAAATTTCAGAAGATCCGACCCACCATTTGCATCAACA 248 Query 240 TCAATCTCGGATCCAATCCACGCGAAACCCGGATCCGAATTCCTGAAATGGATCAAACCA 299 |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| Sbjct 249 TCAATCTCGGATCCAACCCACGAAAAACCCGGACCCGAATTCCTGAAATGGATCAAACCC 308 Query 300 GCATCGCGAAGCAGTCCAAGAATTCAAACACTCATGAAACAACTCTCTGTCTGGGAACGT 359 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 309 GCATCACGAAGCAGTCCAAGAATTCAAACACTCATCAAACAACTCTCCGTCTGGGAACGT 368 Query 360 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTTACATACGTTGCTCTTCTC 419 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 369 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTCACATACGTTACTCTTCTC 428 Query 420 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATCGCAAC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 429 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATAGTAAC 488 Query 480 ACATTTGATGCTATAGTTAAGACATTTCAAGCTAAAGGTGTTTTAGGTTTCTACAGTGGT 539 ||||||||||||||||| || || ||||||||||||||| | ||||||||||| |||||| Sbjct 489 ACATTTGATGCTATAGTGAAAACCTTTCAAGCTAAAGGTATATTAGGTTTCTATAGTGGT 548 Query 540 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTTGGTACTTGTGAG 599 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 549 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTCGGTACTTGTGAG 608 Query 600 TTTGGTAAGTCTCTCCTCTCCAAATTCCCGGATTTTCCGACGGTTTTAATCCCGCCTACT 659 |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 609 TTTGGTAAGTCTCTGCTCTCTAAGTTCCCTGATTTTCCGACGGTTTTAATCCCGCCTACT 668 Query 660 GCTGGTGCTATGGGAAACATAATCTCGTCGGCGATAATGGTTCCTAAAGAGCTTATTACA 719 |||||||||||||||||||||||||| || || |||||||||||||||||||| |||||| Sbjct 669 GCTGGTGCTATGGGAAACATAATCTCTTCAGCTATAATGGTTCCTAAAGAGCTCATTACA 728 Query 720 CAGAGAATGCAAGCTGGAGCTAGTGGGAGGTCGTATCAAGTTTTGCTTAAGATACTTGAG 779 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 729 CAGAGAATGCAAGCTGGAGCTAGTGGGAGATCTTATCAAGTTTTACTTAAGATACTTGAG 788 Query 780 AAAGATGGAATCTTGGGGCTTTATGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCG 839 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 789 AAAGATGGAATCTTGGGGCTTTACGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCC 848 Query 840 GCTGGTGTACTAAGTTATTCGTCGTTTGAGTATCTGAAAGCAGCGGTTTTGGAGAAAACG 899 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 849 GCTGGTGTACTCAGTTATTCGTCGTTTGAGTATCTGAAAGCCGCGGTTTTGGAGAAAACG 908 Query 900 CAGCAGAGCCATCTGGAGCCTTTGCAGAGTGTTTGTTGTGGTGCGTTGGCTGGTGCGATA 959 ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 909 AAGCAGAGCCATCTTGAGCCTTTGCAGAGTGTTTGTTGCGGTGCGTTGGCTGGTGCGATA 968 Query 960 TCTGCTTCGATAACCACACCATTAGATGTGGTGAAGACTAGGCTGATGACACAGATTCAT 1019 || ||||||||||| || || |||||||| |||||||||||||||||||||||||||||| Sbjct 969 TCGGCTTCGATAACTACGCCGTTAGATGTTGTGAAGACTAGGCTGATGACACAGATTCAT 1028 Query 1020 GTGGAGGCAGTGAATAAACTTGGTGCTGCTATGTATACTGGTGTTGCTGGAACAGTGA-G 1078 |||||||| ||| ||||||| |||| |||||||||||||||||||||||| ||||||| | Sbjct 1029 GTGGAGGCTGTGGATAAACTCGGTGGTGCTATGTATACTGGTGTTGCTGGGACAGTGAAG 1088 Query 1079 ACAGATATTGAAAGAGGAAGGTTGGGTTGGTTTTACCCGTGGCATGGGGCCCCGAGTTGT 1138 |||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 1089 -CAGATATTGACAGAGGAAGGTTGGGTTGGTTTTACCCGCGGCATGGGACCTCGAGTTGT 1147 Query 1139 TCACAGCGCTTGTTTCTCAGCGATCGGTTATTTTGCGTTTGAGACTGCGAGGCTTACAAT 1198 |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1148 TCACAGCGCTTGTTTCTCTGCGATCGGTTATTTTGCCTTTGAGACTGCTAGGCTTACAAT 1207 Query 1199 CTTAAATGAATATTTGAAAAGGAAAGAAGATTCTGAAGCTACCGTTGCTGCTGATTCTTG 1258 ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1208 CTTGAATGAATATTTGAAAAGGAAAGAAGAGTCTGAAGCTAACGTTGCTGCTGATTCTTG 1267 Query 1259 AGTTTGCTTTTTGGTATAGTC 1279 |||| | |||||||||||||| Sbjct 1268 AGTTCGGTTTTTGGTATAGTC 1288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62901282885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5