BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949118
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47840.1 | Symbols: AMK2 | adenosine monophosphate kinase | ... 1186 0.0
> AT5G47840.1 | Symbols: AMK2 | adenosine monophosphate kinase
| chr5:19375441-19378339 FORWARD LENGTH=1180
Length=1180
Score = 1186 bits (642), Expect = 0.0
Identities = 736/780 (94%), Gaps = 11/780 (1%)
Strand=Plus/Plus
Query 6 agaaagagagattgagagagagaCATGACGGGCTGTGTGAATTCTATTTCTCCGCAGCCG 65
|||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 26 AGAAAGAGAG--TGGGAGAGAGACATGACGGGCTGTGTGAATTCTATTTCTCCGCCGCCG 83
Query 66 GTGACTTTATACCGGCCTCGTGCCTCTCCGTCACCAGCTTCACGGTCATCTTTCTCATTT 125
|||||||||||||||| |||||||||||||||| | | | | ||| | ||||||||
Sbjct 84 GTGACTTTATACCGGCATCGTGCCTCTCCGTCA-C-G-GT--C-GTC--C-TTCTCATTA 134
Query 126 TCCGGAGATTCCGTACACTCTCTTTACCGTCTCCGACGTGTTTCGAGGTCTCCGTCGATT 185
||||| ||| || |||||||||||||||| | ||||||||| || || ||||||||||||
Sbjct 135 TCCGGCGATGCCTTACACTCTCTTTACCGGCACCGACGTGTATCAAGATCTCCGTCGATT 194
Query 186 ATCGCCCCCAAATTCCAGATCGTGGCGGCTGAAAAATCGGAGCCTCTCAAAATTATGATT 245
||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 195 ATCGCTCCCAAATTTCAGATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATA 254
Query 246 TCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAATATGGT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAATATGGT 314
Query 306 TTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTTCTGGAAGTGAAAAT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTTCTGGAAGTGAAAAT 374
Query 366 GGAAGACGTGCTAAAGAACATATGGAGAAAGGACAATTGGTCCCTGATGAAATAGTTGTA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGAAGACGTGCTAAAGAACATATGGAGAAAGGACAATTGGTCCCTGATGAAATAGTTGTA 434
Query 426 ATGATGGTAAAAGATCGTTTATCGCAGACAGATTCAGAGCAAAATGGGTGGCTTTTGGAT 485
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 435 ATGATGGTAAAAGATCGTTTATCACAGACAGATTCAGAGCAAAAAGGATGGCTTTTGGAT 494
Query 486 GGATATCCAAGGAGCGCATCACAGGCAACAGCTCTCAGGGGATTTGGATTCCAGCCTGAT 545
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 495 GGATATCCAAGGAGTGCATCACAGGCAACAGCTCTCAAGGGATTTGGATTCCAGCCTGAT 554
Query 546 CTATTCATTGTCCTGGAAGTTCCTGAAGATATACTTATTGAAAGAGTTGTTGGGCGTCGA 605
|||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 555 CTATTCATTGTCCTCGAAGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGA 614
Query 606 TTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCTCCTCCAGAGACAGAAGAG 665
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 615 TTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAGAG 674
Query 666 ATTGCTGCTAGACTCACCCAACGTTTTGATGATACCGAAGAGAAGGCAAAACTGCGGCTG 725
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ATTGCTGTTAGACTCACCCAACGTTTTGATGATACCGAAGAGAAGGCAAAACTGCGGCTG 734
Query 726 AAAACTCATAACCAAAATGTGAGAGATGTGCTTTCTATGTACGACGATATTACTATTAAG 785
|| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 735 AAGACTCATAACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAG 794
Score = 283 bits (153), Expect = 2e-75
Identities = 173/183 (95%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 784 AGGAACACCGCTCCAAGTTCACTTTTAAGTTGAATCATTCTTGGTACAAACCTGAGGAAG 843
|||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 867 AGGAACACTGCTCCAAGTTCACTTTTAAGTTGATTCGTTCTTGGTACAAACCTGATGAAG 926
Query 844 TGCTTGCCCAGATCTACACTACTGTGTCCAAATTGCTTCAACAGAGGAACACTGCTTCAA 903
||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 927 TGCTTACCCAGATCGACACTACTATGTCCAAATTGCTTCAACAGAGGAACTCTGCTTCAA 986
Query 904 GTTCACTTTTAAGTTGAATCATTCTTGGCAAGGACCTAACCAGCGGTAAATATCCTTTCT 963
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 987 GTTCACTTGTAAGTTGAATCATTCTTAGCAAGGACCTAACCAGCGGTAAATATCCTTTCT 1046
Query 964 TGC 966
|||
Sbjct 1047 TGC 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5