BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949213
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor ... 2346 0.0
AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361... 244 1e-63
> AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor
| chr5:19522255-19524653 REVERSE LENGTH=1896
Length=1896
Score = 2346 bits (1270), Expect = 0.0
Identities = 1432/1513 (95%), Gaps = 0/1513 (0%)
Strand=Plus/Plus
Query 1 GATCATTGAAGTGACTAGAAATGTACAAGCAGCCTAGACAAGAGCTTGAGGCTTATTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 162 GATCATTGAAGTGACTAGAAATGTACAAGCAGCCTAGACAAGAGCTTGAGGCTTATTATT 221
Query 61 TTGAGCATAACTCTGCTGGGAAGCTTATGTACTTACCGGTTCATAACTCGCGTAAACGGT 120
|||||| |||||||| || |||||||| ||||||||||||| | ||||| ||||||||||
Sbjct 222 TTGAGCCTAACTCTGTTGAGAAGCTTAGGTACTTACCGGTTAACAACTCTCGTAAACGGT 281
Query 121 TTTGTACGCTGGAGCCATCTCCTGACTCTCCTGCTTATAATGCTCTGTCTACTGCTACAT 180
|||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 282 TTTGTACGCTCGAGCCATTTCCTGACTCTCCTCCTTATAATGCTCTATCTACTGCTACAT 341
Query 181 ATGAGGATACATGTGGCTCTTGTGTGACTGATGATTTGAATGACTTCAAACACAAGATTA 240
|||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 342 ATGATGATACATGTGGCTCTTGTGTAACGGATGAGTTGAATGACTTCAAACACAAGATTA 401
Query 241 GGGAAATAGAGACTGTGATGATGGGGCCTGACTCGTTGGACTTAGTCGTCGATTGCACCG 300
||||||| || || |||||||||||||| ||||||||||||||| | ||||||||||| |
Sbjct 402 GGGAAATCGAAACGGTGATGATGGGGCCGGACTCGTTGGACTTACTTGTCGATTGCACGG 461
Query 301 ATTCCTTTGATTCCACGGCGTGTCAAGAGATTAATAGTTGGAGATCAACTCTTGAGGCTA 360
| || ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 462 ACTCATTTGATTCCACGGCGAGTCAAGAGATTAATGGTTGGAGATCAACTCTAGAGGCTA 521
Query 361 TCTCGAGGCGGGATTTAAGAGCTGATCTTGTTTCATGTGCGAAAGCTATGTCGGAAAATG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 522 TCTCGAGGCGGGATTTAAGAGCTGATCTTGTTTCATGTGCCAAAGCTATGTCGGAAAATG 581
Query 421 ATCTTATGATGGCTCATTCGATGATGGAGAAGTTACGGCAGATGGTATCGGTTTCTGGTG 480
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 582 ATCTTATGATGGCTCATTCAATGATGGAGAAGTTGCGGCAGATGGTTTCGGTTTCTGGTG 641
Query 481 AGCCTATCCAACGGTTGGGAGCTTACTTATTGGAAGGTCTAGTGGCGCAGTTAGCTTCAT 540
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 642 AGCCTATTCAACGGTTGGGAGCTTACTTATTGGAAGGTCTAGTGGCGCAGCTAGCTTCGT 701
Query 541 CGGGTAGTTCCATATACAAAGCACTTAATAAGTGCCCTGAACCGGCTAGCACCGAGCTTC 600
|||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 702 CGGGCAGTTCTATATACAAAGCACTTAATAGGTGTCCTGAACCGGCTAGCACAGAGCTTC 761
Query 601 TCTCTTACATGCACATTCTCTATGAGGTCTGTCCTTACTTCAAGTTCGGATACATGTCAG 660
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 762 TCTCTTACATGCACATTCTCTATGAGGTTTGTCCTTACTTCAAGTTTGGATACATGTCAG 821
Query 661 CAAATGGTGCTATTGCTGAAGCCATGAAAGAAGAAAACAGAGTTCACATTATCGATTTCC 720
||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 822 CAAATGGTGCTATTGCTGAGGCAATGAAGGAAGAAAACAGAGTTCACATTATTGATTTCC 881
Query 721 AAATCGGTCAAGGGAGTCAATGGGTCACTCTTATCCAGGCTTTTGCAGCTAGGCCTGGTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AAATCGGTCAAGGGAGTCAATGGGTCACTCTTATCCAGGCTTTTGCAGCTAGGCCTGGTG 941
Query 781 GGCCGCCTCGGATTCGAATAACGGGTATTGACGATATGACTTCAGCGTATGCTCGTGGAG 840
|||| || |||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 942 GGCCTCCGCGGATTCGGATAACGGGTATCGATGATATGACTTCAGCGTATGCTCGTGGAG 1001
Query 841 GTGGCCTAAGCATTGTTGGAAACAGACTCGCTAAGCTTGCTAAGCAGTTTAACGTTCCAT 900
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1002 GTGGCCTAAGCATTGTTGGAAATAGACTCGCTAAGCTTGCTAAGCAGTTCAACGTTCCAT 1061
Query 901 TCGAGTTTAACTCGGTATCAGTGTCAGTGTCCGAGGTTAAACCTAAGAACCTCGGGGTTC 960
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1062 TCGAGTTTAACTCGGTATCGGTGTCAGTTTCCGAGGTTAAACCTAAAAACCTCGGGGTTC 1121
Query 961 GACCAGGGGAAGCTCTAGCCGTCAACTTTGCCTTTGTGCTTCATCATATGCCAGACGAAA 1020
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1122 GACCTGGGGAAGCTCTAGCCGTAAACTTTGCCTTTGTGCTTCATCATATGCCAGACGAAA 1181
Query 1021 GCGTGAGCACCGAGAATCACCGCGACCGGTTACTGAGAATGGTGAAGAGCTTATCTCCCA 1080
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1182 GCGTGAGCACCGAGAATCACCGCGACCGGTTATTGAGAATGGTGAAGAGCTTATCTCCCA 1241
Query 1081 AGGTGGTGACTCTGGTTGAGCAAGAATCAAACACAAACACGGCGGCTTTCTTCCCGAGGT 1140
||||||||||||| || || ||||| |||||||||||||| || ||||||||||||||||
Sbjct 1242 AGGTGGTGACTCTTGTGGAACAAGAGTCAAACACAAACACAGCCGCTTTCTTCCCGAGGT 1301
Query 1141 TCATGGAAACAATGAACTACTATGCCGCGATGTTTGAGTCAATTGATGTGACTCTCCCAA 1200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1302 TCATGGAGACAATGAACTACTATGCCGCGATGTTTGAGTCAATTGATGTGACTCTACCAA 1361
Query 1201 GAGATCACAAACAGAGGATTAATGTAGAGCAGCATTGTCTAGCCAGAGACGTCGTGAACA 1260
||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 1362 GAGATCACAAACAGAGGATTAATGTGGAGCAACATTGTCTAGCAAGAGATGTCGTGAACA 1421
Query 1261 TCATCGCATGTGAAGGAGCTGATCGTGTGGAGCGACACGAGCTTCTAGGGAAATGGAGGT 1320
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1422 TCATCGCATGTGAAGGAGCTGATCGGGTGGAGCGACACGAGCTCCTAGGAAAATGGAGGT 1481
Query 1321 CACGGTTTGGGATGGCTGGTTTCACTCCTTACCCGTTGAGCCCCTTGGTGAATTCAACCA 1380
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1482 CACGGTTTGGGATGGCGGGTTTCACTCCTTACCCGTTGAGTCCCTTGGTGAATTCAACCA 1541
Query 1381 TTAAAAGTCTACTGAGGAACTACTCGGACAAGTACAGGCTAGAAGAAAGAGATGGAGCTT 1440
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1542 TTAAAAGTCTGCTTAGGAACTACTCAGACAAGTACAGGCTAGAAGAAAGAGATGGAGCTT 1601
Query 1441 TGTATCTTGGTTGGATGCATCGAGATTTGGTCGCCTCGTGTGCGTGGAAATGAGACAGTG 1500
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1602 TGTATCTTGGTTGGATGCATCGAGATTTGGTTGCCTCGTGTGCTTGGAAATGAGACAGTG 1661
Query 1501 ACATTTCTCTAGT 1513
|||||||||||||
Sbjct 1662 ACATTTCTCTAGT 1674
> AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361-1722604
REVERSE LENGTH=1863
Length=1863
Score = 244 bits (132), Expect = 1e-63
Identities = 825/1146 (72%), Gaps = 102/1146 (9%)
Strand=Plus/Plus
Query 387 CTTGTTTCATGTGCGAAAGCTATGTCGGAAAATGATCTTATGATGGCTC-ATTCGATG-A 444
|||||| | ||||| |||||| | || || ||| ||||| | ||||| | | | | || |
Sbjct 567 CTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCTAATGGCACGA-T-GGTGTA 624
Query 445 T-GGAGAAGTTACGGCAG-ATGGTATCGGTTTCTGGTGAGCCTATCCA-ACGGTTGGGAG 501
| || | |||| | || | ||||| ||| ||||||||||||| ||||| | | |||||||
Sbjct 625 TGGGTG-AGTTGC-GCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGA-GATTGGGAG 681
Query 502 CTTACT-TATTGGAAGGTCTAGTGGCGCA-G-TTAGCTTCATCGGGTAGTTCCATATACA 558
|||| | | || ||||| || || || | | || ||| | || |||||||| |||||
Sbjct 682 CTTA-TATGTTAGAAGGGCTTGTTGC-TAGGCTT-GCTGCTTCTGGTAGTTCGATATA-T 737
Query 559 AAGCACTTAAT-AAGTGCC-CTGAACCGGCTAG-CACCGAGCTTCTCTCTTACATGCACA 615
||| | | | ||| || ||||| | || | || || | ||||| || |
Sbjct 738 AAG-TC-T-CTCCAGT-CCAGAGAACCAGAGAGTTA-TGAATTTTTATCTTATGTGTATG 792
Query 616 TTCT-CTATGAGGTCTGTCCTTACTTCAAGTTCGGATACATGTCAGCAAATGGTGCTATT 674
|||| | ||||||| ||||| || |||||||| |||||||||||||| |||||||| |||
Sbjct 793 TTCTGC-ATGAGGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATT 851
Query 675 GCTGAAGCCATGAAAGAAGAAAACA-GAGTTCACATTATCGATTTCCAAATCGGTCAAGG 733
|| ||||| ||||| || ||| | | || |||||||||| || |||||||| || |||||
Sbjct 852 GCAGAAGCAATGAAGGATGAAGAGAGGA-TTCACATTATTGACTTCCAAATTGGACAAGG 910
Query 734 GAGTCAATGGGTCA-CTCTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGCCGCCTCGGA 792
||| || ||| | | | ||||||||||||||||||||||||||||||||| | || |
Sbjct 911 GAGCCAGTGGAT-AGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATA 969
Query 793 TTCGAATAACGGGTA-TTGACGATATGACTTCAGCGTATGCTCGTGGAGGTGGCCTAAGC 851
||||||| || || | ||| | | || | | | || || || ||| || |
Sbjct 970 TTCGAATTACCGG-AGTTG--G-T--GA-T---G-G-AT-CT-GTCTTGGT----TA--C 1009
Query 852 ATTGTTGGAAACAGACTCGCTAAGCTTGCTAAGCAGTTTAACGTTCCATTCGAGTTT-AA 910
| | | || ||||| | || ||||| ||| ||||| | ||||||||| || || ||
Sbjct 1010 AGTCAAG-AAG-AGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTC-AGGTTCAA 1066
Query 911 CT-CGGTATCA-GTGTCA-GT-GTCCGAGGTTAAACCT--AAGAACCTCGGGGTTCGACC 964
| |||| ||| | | || || || || ||| || | || || || | || |||
Sbjct 1067 -TGCGGTTTCAAG-GCCAAGTTGT--GAAGTTGAAG-TGGAA-AATCTTGATGTCCGAG- 1119
Query 965 AGGG-GAAGCTCTAGCCGTCAACTTTGCCTTTG-TGCTTCATCATATGCCAGACGAAAGC 1022
| || ||||| || | || |||||||| || |||| |||||| ||||||| || ||
Sbjct 1120 ATGGCGAAGCCCTTGGAGTGAACTTTGC-TTACATGCTGCATCATTTGCCAGATGAGAGT 1178
Query 1023 GTGAGCACCGAGAATCACCGCGACCGGTTACTGAGAATGGTGAAGAG-CTTATCTCCCAA 1081
|| |||| || || ||| | |||||||| ||||| ||||||||||| || ||| || ||
Sbjct 1179 GTAAGCATGGAAAACCACAGGGACCGGTTGCTGAGGATGGTGAAGAGTCT-ATCACCTAA 1237
Query 1082 GGTGGTGACTCTGGTTGAGCAAGAAT-CAAACACAAACACGGCGGCTTTC-TTCCCGAGG 1139
|| || ||||| || || ||||||| ||| ||| ||||| | ||||| |||| |||
Sbjct 1238 AGTAGTCACTCTTGTGGAACAAGAATGCAA-CACGAACACTTCCCCTTTCCTTCCT-AGG 1295
Query 1140 TTCATGGAAACAATGAACT-ACTATGCCGCGATGTTTGAGTCAATTGATGTGACT-CTCC 1197
||| | || ||| | || | | || | || ||||| || || || ||||| | | || |
Sbjct 1296 TTCCTTGAGACATT-AAGTTATTACACGGCAATGTTCGAATCTATCGATGTTA-TGCTTC 1353
Query 1198 CAAGAGATCACAAACAGAGGATTAATGTAGAGCAGCATTGTC-TAGCCAGAGACGTCGTG 1256
| ||| ||||||| | ||||| ||| | |||||||| || | | || || || |||||
Sbjct 1354 CGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTG-CATGGCAAGGGATGTCGTC 1412
Query 1257 AACATCATCGCATGTGAAGGAGCTGATCGTG-TGGAGCGACACGAGCTTCTAGGGAAATG 1315
|||||||| || ||||||||||| || | | | || ||||||||||||| ||||||||
Sbjct 1413 AACATCATAGCTTGTGAAGGAGCCGAGAG-GATCGAAAGACACGAGCTTCTCGGGAAATG 1471
Query 1316 GAGGTCACGGTTTGGGATGGCTGGTTTC-ACTCCTTACCCGTTGAGCCCCTTGGTGA-AT 1373
|| |||| ||||| ||||| ||||| | || ||||| |||||| | | | |
Sbjct 1472 GAAGTCAAGGTTTTCCATGGCGGGTTTTGAG-CCATACCCCTTGAGCTCAATCATTTCAG 1530
Query 1374 TCAACCATTAAAAGTC-TACT-GAG-GAACTACTCGGA-CAAGTACAG-GCTAGAAGAAA 1428
|| |||||| | | | | || ||| || ||| | | | ||| | | | |||||||
Sbjct 1531 CCA-CCATTAGA-GCCCT-CTTGAGAGAT-TACA-GCAACGGGTAT-GCGATTGAAGAAA 1584
Query 1429 GAGATGGAGCTTTGTATCTTGGTTGGATGCATCGAGAT-TTGGTCGCCTCGTGTGCGTGG 1487
||||||| ||| |||| |||||||||||| | ||| || |||||| | || ||||| |||
Sbjct 1585 GAGATGGTGCTCTGTACCTTGGTTGGATGGACCGA-ATCTTGGTCTCATCTTGTGCATGG 1643
Query 1488 AAATGA 1493
|| |||
Sbjct 1644 AAGTGA 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5