BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949280
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48590.1 | Symbols: | Protein of unknown function (DUF760) ... 1701 0.0
AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding ... 387 2e-106
> AT5G48590.1 | Symbols: | Protein of unknown function (DUF760)
| chr5:19698407-19699947 FORWARD LENGTH=1280
Length=1280
Score = 1701 bits (921), Expect = 0.0
Identities = 1029/1081 (95%), Gaps = 8/1081 (1%)
Strand=Plus/Plus
Query 5 ttttttGCTtctctctttcaatggacacctctctctcccaccacggatctctctcc-ttt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 50 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 108
Query 64 ctcCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 123
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 109 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 168
Query 124 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 183
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 169 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 228
Query 184 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 243
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 229 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 288
Query 244 GTGAAAAAGCGGCAGCTCTTTCACTTCGCCGTCGCTGATTTGCTTAAACAGCTTGCCGAT 303
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 289 GTGAAAAAACGGCAGCTCTTTCATTTCGCCGTCGCTGATTTGCTTAAACAGCTCGCTGAT 348
Query 304 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTCTGGTTCCGATGAAGCTTCTCTA 363
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 349 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTATGGTTCCGATGAAGCTTCCCTC 408
Query 364 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAACAGCAATTGAAGACATAATG 423
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 409 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAATTGCAATTGAAGACATAATG 468
Query 424 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 528
Query 484 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCAAAAGACTGGGAACTGGAGTCA 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 529 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCGAAAGACTGGGAACTTGAGTCA 588
Query 544 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACACAGTAACGCAGTCATCAGTTTA 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACATAGTAACGCAGTCATCAGTTTA 648
Query 604 CGAGTGAATTCGAGTTTGACTGACGATTGTGCAACAACGGAGATAGATAAGAATCATCTC 663
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 649 AGAGTGAATTCGAGTTTGACTGACGATTGTGCGACAACGGAGATAGATAAGAATCGTCTC 708
Query 664 AGTAAAGTATACACAGCATCGGTCTTGTATGGATACTTCTTGAAATCCGCTTCTCTTAGA 723
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 709 AGTAAAGTATACACAGCTTCGGTCTTATATGGATACTTTTTAAAATCTGCTTCTCTTAGA 768
Query 724 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACCAAGCAACTGAGACAT 783
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 769 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACTAAGCAACTGAGGCAT 828
Query 784 TACATTTCTGAGTTCGATCCCAAGATATTGCAGAGATGCGCAAAGCCAAGGTCACATGAA 843
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 829 TACATTTCTGAGTTCGATCCCAAGATATTGCGGAGATGCGCAAAACCAAGGTCACATGAA 888
Query 844 GCAAAAAGCCTGATAGAGAAGCAGAGCTTAGCTCTTTTCGGTCCTGAGGAAAGCAGCAAA 903
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 889 GCAAAAAGCCTGATAGAAAAGCAGAGTTTAGCTCTTTTTGGTCCTGAGGAAAGCAGCAAA 948
Query 904 GAGAGCATTGTGACATCGTTTTCTAACCTGAAGAGGCTGCTTCTTGAGGCTGTGGCTTTT 963
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 949 GAGAGCATTGTGACATCGTTTTCTAGCCTGAAGAGGTTGCTTCTTGAGGCTGTGGCGTTT 1008
Query 964 GGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAAT 1068
Query 1024 GAGAATGCAGAGGAAGAAGA-AAATAGCAGTGTATGAAGTATG-A--A-CCAGTTTGCTA 1078
|||||||||||||||||| | |||||||||||| ||||||||| | | |||||||||||
Sbjct 1069 GAGAATGCAGAGGAAGAA-ACAAATAGCAGTGTTTGAAGTATGTATGAACCAGTTTGCTA 1127
Query 1079 G 1079
|
Sbjct 1128 G 1128
> AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding
protein 15 kD-2 | chr5:19695929-19698712 REVERSE LENGTH=1179
Length=1179
Score = 387 bits (209), Expect = 2e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 5 ttttttGCTtctctctttcaatggacacctctctctcccaccacggatctctctcc-ttt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 257 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 199
Query 64 ctcCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 123
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 139
Query 124 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 183
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 138 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 79
Query 184 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 243
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 78 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 19
Query 244 GTGAAAAAGCGGCAGCTC 261
|||||||| |||||||||
Sbjct 18 GTGAAAAAACGGCAGCTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5