BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949389 Length=1196 Score E Sequences producing significant alignments: (Bits) Value AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1834 0.0 AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 198 9e-50 AT3G06870.1 | Symbols: | proline-rich family protein | chr3:21... 198 9e-50 > AT5G49100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19897370-19899114 REVERSE LENGTH=1745 Length=1745 Score = 1834 bits (993), Expect = 0.0 Identities = 1163/1237 (94%), Gaps = 43/1237 (3%) Strand=Plus/Plus Query 1 GTTTTGGTTTTTGGTTAT---CAATGGTGGAAGTGAAAGATCAAGATATGGGTGATGGTA 57 |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 202 GTTTTGGTTTTTGGTTATCAACAATGGTGGAAGCAAAAGATCAAGATATGGGTGATGGTA 261 Query 58 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 321 Query 118 AAGAAAAGCTTGGAAAGCTTGTAActtcatctttcccacttcctaaacacctctcttctt 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 322 AAGAAAAGCTTGGAAAGCTTGTAACTTCATCTTTCCCACTTCCTAAACACCTCACTTCCT 381 Query 178 cttcaacttcttcttctccttccttcAGATCTGACTCTGTTGGTAGTACAACCACTGCCT 237 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 382 CTTCAACTTCTTCTTCTCCTTCCTTCAGATCTGACTCTGTTGGTAGCACAACCACTGCCT 441 Query 238 CTGCAGC---T-tct---c-tctc--tctctc-C-GTCTCCGGAGCAAC--A-AACAAC- 281 |||| || | ||| | |||| |||||| | |||||||||||||| | |||||| Sbjct 442 CTGCCGCAAATCTCTCAGCGTCTCTTTCTCTCTCTGTCTCCGGAGCAACAAACAACAACA 501 Query 282 A-A-CAAGCTTCCGTTTTTGCTAGCTAAGAAGAAGAAGAAGATGCTTACTG---CTTCTT 336 | | |||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 502 ACAGCAAGCTTCCGTTTTTGTTAGCTAAGAAGAAGAAGAAGATGCTTACTGCTTCTTCTT 561 Query 337 CTTCTGCAACCACGGCGAATATTGTTTACAAGAGAAGTCAATCTACGAGGACTACGAAGA 396 ||||| | |||||||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 562 CTTCTTCGACCACGGCTAATATTGTCTACAAGAGAAGTCAATCTACAAGGACTACGAAGA 621 Query 397 CAACGTACGGAGATTCAGATTTCAGTCCGAGAAAGAGAAATGGGTTTTGGTCGTTTCTTC 456 |||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||| Sbjct 622 CAACGTACGGAGATTCAGATTTGAGCCCGAGAAAGAGAAATGGGTTTTGGTCCTTTTTTC 681 Query 457 ATCTCTACTCTTCTAAACATCATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 516 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 682 ATCTCTACTCTTCGAAACAACATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 741 Query 517 TAAGCCAGACTGAGACAAAAACAGAGTTGACAGAGACTACAACAGTTGGATCTTCGTCTT 576 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 742 TAAGCCAGACTGAGACAAAAACAGAGTTGGCAGAGACTACAACAGTGGGATCTTCGTCTT 801 Query 577 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGA---GTT-GT--TGGTGGGAGTAGTAGTA 630 |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| Sbjct 802 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGAGTTGTTGGTGGTGGTGGGAGTAGTAGTA 861 Query 631 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTAACAC 690 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 862 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTCACAC 921 Query 691 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 922 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 981 Query 751 GTGATTTCTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 810 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 982 GTGATTTCTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 1041 Query 811 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTTAGTAGTAACCCTAGTAATGGTG 870 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1042 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTCAGTAGTAACCCTAGTAATGGTG 1101 Query 871 TGAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgt 930 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 TTAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGT 1161 Query 931 cttcttcttcatcttcatcatcatgggtatcatcatcatcagctgaacatcatcatcat- 989 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 CTTCTTCTTCATCTTCATCATCATGGGTATCATCATCATCAGCTGAACATCATCATCATC 1221 Query 990 a-a-tcataacatgggtcatGGTGG---AGGAAGGAACAGGAGCTGGGGATGGGCATTTG 1044 | | ||||||||||||||||||||| |||||||||||| |||||||||||| |||||| Sbjct 1222 ATAATCATAACATGGGTCATGGTGGTGGAGGAAGGAACAGAAGCTGGGGATGGTCATTTG 1281 Query 1045 CAAGTCCAATGAGAGCTTTTAGTTCTTCTTCTT-CGTTTGGTAAAAGAGGCCGTACAATT 1103 ||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||| Sbjct 1282 CAAGTCCAATGAGAGCTTTTACTTCTTCTTCTTAC-TCTGGTAAAAGAGGCCGTACAATT 1340 Query 1104 TCAGATTCTAC-A-A-GCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1160 ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 TCAGATTCTACTACAAGCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1400 Query 1161 TCTGTCAGAAGCTGAATAAATTAA-AAAGTTTGATCT 1196 ||||||||||||||||| ||| || ||| |||||||| Sbjct 1401 TCTGTCAGAAGCTGAATTAAT-AATAAACTTTGATCT 1436 > AT3G06868.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2167730-2169222 FORWARD LENGTH=1493 Length=1493 Score = 198 bits (107), Expect = 9e-50 Identities = 212/262 (81%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 698 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 757 ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 808 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTT 867 Query 758 CTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAG-AGTTGAGTCACAGA 816 |||||||||||| ||||||||||||| |||||| | |||||||| | |||||||||||| Sbjct 868 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGA-TTGAGTCACAGA 926 Query 817 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTTAGTAGT-AACCCTAGTA-ATGGTGTG 872 |||||| | ||| || || ||| ||| || || || | || | ||| || Sbjct 927 GAGAAGCCACTAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAGATGCAATG 982 Query 873 AGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgtct 932 || || ||||| | ||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct 983 AGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGACATCATCATCT 1042 Query 933 tcttcttcatcttcatcatcat 954 | | ||||| || |||||| Sbjct 1043 ACAACATCATCAACAACATCAT 1064 > AT3G06870.1 | Symbols: | proline-rich family protein | chr3:2167847-2168960 REVERSE LENGTH=931 Length=931 Score = 198 bits (107), Expect = 9e-50 Identities = 212/262 (81%), Gaps = 10/262 (4%) Strand=Plus/Minus Query 698 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 757 ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 424 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTT 365 Query 758 CTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAG-AGTTGAGTCACAGA 816 |||||||||||| ||||||||||||| |||||| | |||||||| | |||||||||||| Sbjct 364 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGA-TTGAGTCACAGA 306 Query 817 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTTAGTAGT-AACCCTAGTA-ATGGTGTG 872 |||||| | ||| || || ||| ||| || || || | || | ||| || Sbjct 305 GAGAAGCCACTAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAGATGCAATG 250 Query 873 AGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgtct 932 || || ||||| | ||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct 249 AGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGACATCATCATCT 190 Query 933 tcttcttcatcttcatcatcat 954 | | ||||| || |||||| Sbjct 189 ACAACATCATCAACAACATCAT 168 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58734637650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5