BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949481
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49700.1 | Symbols: | Predicted AT-hook DNA-binding family ... 1225 0.0
AT1G14490.1 | Symbols: | Predicted AT-hook DNA-binding family ... 555 3e-157
> AT5G49700.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr5:20192599-20193429 FORWARD LENGTH=831
Length=831
Score = 1225 bits (663), Expect = 0.0
Identities = 779/832 (94%), Gaps = 20/832 (2%)
Strand=Plus/Plus
Query 21 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTCTCCAAGCTT-C-C-TCAT 77
||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||
Sbjct 1 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCAT 60
Query 78 ---------------caacaacaacaacaacaCTCTCTTACCTCTCACTTCCACCTCTCC 122
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACAACAACAGCAACAACAACAACAACAACACTCTCTTACCTCTCACTTCCACCTCTCC 120
Query 123 TCCACCGCAACACCCACCATCGATGACTCCTCCATCGAAGTCGTCCGACGTCCACGTGGC 182
||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGC 180
Query 183 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCTGTCTTCGTTACACGTGATACCGAC 242
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 181 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGAC 240
Query 243 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCATCAGGAAACGACGTCGTTGAAGCCATC 302
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC 300
Query 303 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTTTGTGTCCTTAGTGGCTCTGGCTCTGTA 362
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTA 360
Query 363 GCTAACGTCACTTTACGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACCATAACTTTCCAC 422
||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||
Sbjct 361 GCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACCATAACTTTCCAT 420
Query 423 GGAAAGTTCGATctcctctccgtctccgcaac-tttcctccctcctccgcctcgtacttc 481
|||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 421 GGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTT-CTCCCTCCTCCGCCTCGTACTTC 479
Query 482 cttgtcccctcccgtctctAACTTCTTCACCGTCTCTCTAGCCGGACCTCAAGGACAAAT 541
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 480 CTTGTCTCCTCCCGTTTCTAACTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAAT 539
Query 542 CATCGGTGGGTTCGTCGCTGGTCCACTTATCTCCGCAGGAACAGTTTACGTCATCGCTGC 601
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 540 CATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGC 599
Query 602 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 659
Query 662 GGGGACAGGAGAAAGAGAGGGCCAATCTCCACCGGTGTCTGGTGGCGGTGAAGAGTCAGG 721
||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 660 GGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGGTGGCGGTGAAGAGTCAGG 719
Query 722 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 779
Query 782 TGGCTCTGATGTTATTTGGGCCCCCACCGCCAGGGCTCCACCGCCATACTAA 833
|||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 780 TGGCTCTGATGTTATTTGGGCCCCTACAGCCAGAGCTCCACCGCCATACTAA 831
> AT1G14490.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr1:4958514-4959325 REVERSE LENGTH=812
Length=812
Score = 555 bits (300), Expect = 3e-157
Identities = 478/562 (85%), Gaps = 20/562 (4%)
Strand=Plus/Plus
Query 164 CGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCTGTCTT 223
|||| | ||||||||||||||||| | |||||||||||||||||||||| | || ||||
Sbjct 9 CGTCGGGCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTT 68
Query 224 CGTTACACGTGATACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCATCAGGAAA 283
| | ||| || |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 69 TG-T-CAC--CAT--TGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAA 122
Query 284 CGACGTCGTTGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTTTGTGTCCT 343
||| |||||||||||| | ||||||||||||||| ||||| ||||||| |||| |||||
Sbjct 123 CGATGTCGTTGAAGCCCTAAACCGTTTCTGCCGCGGTAAAGCCATCGGCTTTTGCGTCCT 182
Query 344 TAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCTTCTCCGGCAGCTCCTGG 403
|||||||| ||||| || ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 183 CAGTGGCTCAGGCTCCGTTGCTGATGTCACTTTGCGTCAGCCTTCTCCGGCAGCTCCTGG 242
Query 404 CTCAACCATAACTTTCCACGGAAAGTTCGATctcctctccgtctccgcaactttcctccc 463
||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 243 CTCAACCATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCACTTTCCTCCC 302
Query 464 tcctccgcctcgtacttccttgtcccctcccgtctctAACTTCTTCACCGTCTCTCTAGC 523
||||| |||| ||| |||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 303 TCCTCTACCTCCTACCTCCTTGTCCCCTCCCGTCTCCAATTTCTTCACCGTCTCTCTCGC 362
Query 524 CGGACCTCAAGGACAAA-TCATCGGTGGGTTCGTCGCTGGTCCACTTATCT-CCGCAGGA 581
||||||||| || ||| |||||||||| |||||||||||||| || | | |||| |||
Sbjct 363 CGGACCTCAGGGG-AAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGT-TGCCGCCGGA 420
Query 582 ACAGTTTACGTCATCGCTGCAAGTTTCAACAACCCTTCTTATCACCGGTTACCGGC---G 638
|| |||||| || |||| | |||||||| |||||||| |||||||||||||| || |
Sbjct 421 ACTGTTTACTTCGTCGCCACTAGTTTCAAGAACCCTTCCTATCACCGGTTACCTGCTACG 480
Query 639 GAAGAAGAGCAAA-AACACTCGGCGGGGACAGGAGAAAGAG-AGGGCCAATCTCCACCGG 696
|| |||||||||| || ||||||||| | ||| ||| ||| |||| ||||| || ||||
Sbjct 481 GAGGAAGAGCAAAGAA-ACTCGGCGG--A-AGGGGAA-GAGGAGGGACAATCGCCGCCGG 535
Query 697 TGTCTGGTGGCGGTGAAGAGTC 718
| ||||| || |||| ||||||
Sbjct 536 TCTCTGGAGGTGGTGGAGAGTC 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5