BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949566 Length=910 Score E Sequences producing significant alignments: (Bits) Value AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1236 0.0 > AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20505180-20506338 REVERSE LENGTH=1159 Length=1159 Score = 1236 bits (669), Expect = 0.0 Identities = 851/932 (91%), Gaps = 39/932 (4%) Strand=Plus/Plus Query 1 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTACggtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTAC---- 66 Query 61 gtggtggtggtggtggtggtggtgCAAATGATATGTCAAAGGTTGATCGGCTTATGCTCC 120 |||||| |||||||| | | |||||||||||| |||||||||||| ||||||||| Sbjct 67 -----GGTGGTAGTGGTGGT-G-G-AAATGATATGTCGAAGGTTGATCGGATTATGCTCC 118 Query 121 GGTACCGTCCGATTGCACCGAGACCTGATTCCGGTGGATCTTCTGCTTCACCGACGGAGA 180 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 119 GGTACCGTCCGATTGCACCGAGACCTGATTCTGGTGGATCTCCTGCTTCACCGACGGAGA 178 Query 181 AAAATGGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATT 240 | |||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 179 AGAATGGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATT 238 Query 241 CAAAGGAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGAC 300 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 239 CAAAGGAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGAC 298 Query 301 AGAGAAACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCT 359 |||||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 299 AGAGAAACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCT 357 Query 360 CTTCTCCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAG 419 ||||| || |||||||||||||||||||| ||||||||||||||| ||||| ||||||| Sbjct 358 CTTCTTCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAG 417 Query 420 CTAGGTGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTAT 461 ||||||||||| ||||||||| | | | | | | ||||||||||||| Sbjct 418 TTAGGTGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTAT 477 Query 462 CAGACGGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACG 521 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 478 CAGACAGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACG 537 Query 522 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT 581 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 538 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAAT 597 Query 582 -TTAGAGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 640 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 598 CTT-GAGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 656 Query 641 GAACCGG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGA 699 ||| ||| || ||| | || |||||||||||||||||||||||||||||| ||||||||| Sbjct 657 GAA-CGGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGA 715 Query 700 GTGTGTGG-TTAGTGATGAAGGAGAGGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 758 |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 716 GTGTGTGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 774 Query 759 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 834 Query 819 GTTTGGAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGT 878 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 835 GTTTGGAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGC 894 Query 879 CTCGGACGGTGAGGTTTTGGGCCGGTGGATTA 910 || ||||||||||| || |||||| ||||||| Sbjct 895 CTTGGACGGTGAGGATT-GGGCCGTTGGATTA 925 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44457220095 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5