BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949647
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51020.1 | Symbols: CRL | crumpled leaf | chr5:20745349-2074... 1404 0.0
AT5G51010.1 | Symbols: | Rubredoxin-like superfamily protein |... 248 6e-65
> AT5G51020.1 | Symbols: CRL | crumpled leaf | chr5:20745349-20747277
REVERSE LENGTH=1133
Length=1133
Score = 1404 bits (760), Expect = 0.0
Identities = 823/853 (96%), Gaps = 5/853 (1%)
Strand=Plus/Plus
Query 1 ACTAACTTCGAAACCTTTTAATGGGTACTGAGTCGGGTTCGGATCCGGAATCGAGCTCAA 60
||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 93 ACTAAATTCGAAACCTTTTAATGGGTACCGAGTCGGGTTCGGATCCAGAATCGAGCTCAA 152
Query 61 ACGGTTGGAGCCGTGCTCGTGGTCTAGTGGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 120
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 153 ACGGGTGGAGCCGTGCTCGTGGTCTAGTTGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 212
Query 121 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCTCGTGTCGTCTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 213 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCCCGTGTCGTCTCTC 272
Query 181 GTTCTCTCACCGGAGAGAAGTTTACAAGGGAGCAAGCGTCAAGAGATCCTGAGAATTACT 240
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 273 GTTCTCTCACCGGAGAGAAGTTTACGAGGGAGCAAGCGTCAAGAGATCCTGATAATTACT 332
Query 241 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 392
Query 301 ATCTCGAACAGGCATTTTGGAGGACTCCACAGAAACCGTTTCGACAAAGATTATATATGG 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 393 ATCTCGAACAGGCATTTTGGAGGACTCCTCAGAAACCGTTTCGACAAAGATTATATATGG 452
Query 361 TTAAACCGTGTCCAAAAGAGCTAAAATGTGATGTCGAGGTAAGTTCATATGCGATCAGAG 420
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 453 TGAAACCGTGTCCAAAAGAGCTAAAATGTGATGTTGAGGTAAGTTCATATGCGATCAGAG 512
Query 421 ATGCTGAGGAATACAAAAACTTT-TGTGACCGCCCTAAGGACCAACGCCCACTTCCTGAA 479
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 513 ATGCTGAGGAATACAAAAA-TTTCTGTGACCGGCCTAAGGACCAACGCCCACTTCCTGAA 571
Query 480 GAAGTTATTGGTGATATTGGGGAGCATTTGACAACTATACACCTCAATTGTTGCGACCGT 539
|||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 572 GAAGTTATTGGTGACATTGGAGAGCATTTGACGACTATACACCTGAATTGTTGTGACCGT 631
Query 540 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 691
Query 600 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAGTGAGATACACCTCTGG 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 692 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAATGAGATACACCTCTGG 751
Query 660 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGACCGTACGAG 719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 752 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGTCCGTACGAG 811
Query 720 TTCAAGCCAGCGACATCATCAAGCATCAACGAAAACTTGTCTGCATTGAACATCCTTTAT 779
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 812 TTCAAGCCAGCGACATCATCGAGCATCAACGAAAACTTGTCTGCTTTGAACATCCTTTAT 871
Query 780 CAATCTTCAATTGATAAACCAATCCAAGGGTCCCTCATTTTGCAAGACTAGCCAATGTT- 838
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 872 CAATCTTCTATCGATAAACCAATCCAAGGGTCCCTCATCTTGCAAGACTAGCCAAT-TTG 930
Query 839 CACTCC-TTTTCT 850
||| || ||||||
Sbjct 931 CACCCCCTTTTCT 943
> AT5G51010.1 | Symbols: | Rubredoxin-like superfamily protein
| chr5:20744566-20745703 FORWARD LENGTH=873
Length=873
Score = 248 bits (134), Expect = 6e-65
Identities = 156/166 (94%), Gaps = 3/166 (2%)
Strand=Plus/Minus
Query 687 CAGGTTTGGGGACCAAAGGAAGGACCGTACGAGTTCAAGCCAGCGACATCATCAAGCATC 746
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 873 CAGGTTTGGGGACCAAAGGAAGGTCCGTACGAGTTCAAGCCAGCGACATCATCGAGCATC 814
Query 747 AACGAAAACTTGTCTGCATTGAACATCCTTTATCAATCTTCAATTGATAAACCAATCCAA 806
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 813 AACGAAAACTTGTCTGCTTTGAACATCCTTTATCAATCTTCTATCGATAAACCAATCCAA 754
Query 807 GGGTCCCTCATTTTGCAAGACTAGCCAATGTT-CACTCC-TTTTCT 850
||||||||||| ||||||||||||||||| || ||| || ||||||
Sbjct 753 GGGTCCCTCATCTTGCAAGACTAGCCAAT-TTGCACCCCCTTTTCT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5