BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949787 Length=2370 Score E Sequences producing significant alignments: (Bits) Value AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper... 1085 0.0 AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212... 361 2e-98 AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-130588... 52.8 1e-05 > AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500 Length=2500 Score = 1085 bits (587), Expect = 0.0 Identities = 712/771 (92%), Gaps = 14/771 (2%) Strand=Plus/Plus Query 1603 GAGACTCATGATCAATTCTCACCGGAACTATCTCGTCCTAAAGAGAA-AGATGAGTTTAA 1661 ||||||| ||||||||||||||||||||| |||| ||||||||| || |||||||||||| Sbjct 1473 GAGACTCTTGATCAATTCTCACCGGAACTTTCTCATCCTAAAGA-AAGAGATGAGTTTAA 1531 Query 1662 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAA-ACGA 1720 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1532 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAACA-GA 1590 Query 1721 CCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAGATTCCGGTGGGAG 1780 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1591 GCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAAATTCCGGTGGGAG 1650 Query 1781 ATCAAAGTGAAGTGACGGGAACTGTTGATGAGAAGTTGACACCTGTCAATGAGAAGGATC 1840 |||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1651 ATCAAACTCAAGTGGCGGGAACTGTTGATGAGAAGTTGACTCCGGTCAATGAGAAGGATC 1710 Query 1841 AAGAAACAGAGTCTGCCTTGACGACGAAGTTACCTCTCTCTGGAGGTGGAAGTGGAGCGG 1900 ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | Sbjct 1711 AAGAAACAGAGTCTGCCGTGACGACGAAGTTACCTATCTCCGGAGGTGGAAGTGGAGTAG 1770 Query 1901 AGGAGCAACGAGGGGAAGATAAAAATGTGTCGGGTAGAGATTATCCGGCGGAGAAACTGA 1960 |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1771 AGGAGCAACGAGGGGAAGATAAAAGTGTGTCGGGTAGAGATTATGTGGCGGAGAAACTGA 1830 Query 1961 CGCCTGAAGAAGAAGACAAAGCTTTTTCTGAGATGATTGCTGAGAAGCTTCAGATTGGAG 2020 | ||||||||||||||||||| |||||||| ||| |||| ||||| ||||||||||||| Sbjct 1831 CAACTGAAGAAGAAGACAAAGCCTTTTCTGATATGGTTGCCGAGAAACTTCAGATTGGAG 1890 Query 2021 GAGGAGAAGAGAAGAAG-ACAACGACGACAAAGGAAGTGGAGAAGATCCCTACCGAGAAG 2079 ||| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct 1891 GAGAAGAAGAGAAGAAGGA-AACGACGACAAAGGAAGTGGAGAAGATCTCTACCGAGAAG 1949 Query 2080 AC-GTCggaggagggagaacaaggtgaggcggtggatgaggaagtgaaaggaggaggagg 2138 | | | ||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 1950 GCAG-CATCGGAGG-AG-----GGTGAGGCGGTGGAAGAGGAAGTGAAAGGAGGAGGAGG 2002 Query 2139 aatggttgggaggaTTAAAGGATGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAA 2198 ||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||| | Sbjct 2003 AATGGTTGGGAGGATTAAAGGATGGTTCGGTGGTGGTGCGACTGATGAGGTGAAGCCAGA 2062 Query 2199 ATCGCCACATTCTGTTGAAGAGGCTCCAAAAACATCCGGCTTGTTTGGTGGTGGTGCGAC 2258 ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| Sbjct 2063 ATCGCCACATTCTGTTGAAGAGGCTCCAAAATCATCTGGCTGGTTTGGTGGTGGTGCGAC 2122 Query 2259 GGAGGAGGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2318 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2123 GGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2182 Query 2319 AACCGTTGTTCCGGTGCATAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2369 || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2183 CACTGTTGTTCCGGTGCAGAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2233 Score = 555 bits (300), Expect = 9e-157 Identities = 414/465 (89%), Gaps = 23/465 (5%) Strand=Plus/Plus Query 1140 GGGCTTCGGTGGCGAATCAGGAGTTGAGCTAGAAAAAGATTTTAAGACGAGAAGCCATGA 1199 |||||| |||| ||| ||||||| |||||| |||||||||||| ||||||||| ||||| Sbjct 992 GGGCTTTGGTGACGAGTCAGGAGCTGAGCTGGAAAAAGATTTTCCGACGAGAAGTCATGA 1051 Query 1200 TTTTGATATGAAGACTGAAGCTGGAACGGACACGAATTCTCCATCAAGAAGCTATGAGTT 1259 ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| || Sbjct 1052 TTTTGATATGAAGACTGAAACTGGAATGGACACGAATTCTCCATCAAGAAGCCATGAATT 1111 Query 1260 TGATCTGAAGACAGAATCTGGAAACGACAAGAATTCTCCGCTGGGATTTGGTAGTGAATC 1319 |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1112 TGATCTGAAGACTGAATCTGGAAACGACAAGAATTCTCCGATGGGCTTTGGTAGTGAATC 1171 Query 1320 AGGAGCTGAGCTGGGGAGAGAATTGCCGACGGGAAGTGATGAATTTGATCAGAAGATTGA 1379 |||||||||||| | | | | || | |||||||||||||||| || Sbjct 1172 AGGAGCTGAGCT-----G-G-A------A----AA---A-GAATTTGATCAGAAGAACGA 1210 Query 1380 ATCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGATTAGGAGCTCCGTTGGGAGG 1439 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1211 TTCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGTTTAGGAGCTCCGTTGGGAGG 1270 Query 1440 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGGTATCGACAAAAA 1499 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1271 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGATATCGACAAGGA 1330 Query 1500 T-TCGCCGACGGGATTTGACGGGGAACCAGATTTTCTGGCGAAGGGGAGACCTGGATACG 1558 | | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1331 TGT-GCCGACGGGATTTGACGGAGAACCAGATTTTCTGGCGAAGGGAAGACCTGGATACG 1389 Query 1559 GCGAGGCATCAGAAGAGGATAACTTTTCGGCGAAAAGTGATGATG 1603 | |||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 1390 GTGAGGCATCAGAAGAGGATAAATTTCCGGCGAGAAGTGATGATG 1434 Score = 520 bits (281), Expect = 3e-146 Identities = 415/475 (87%), Gaps = 28/475 (6%) Strand=Plus/Plus Query 1 AAAGaaaaaaaTCTTTGGCAGATGGATCAAACCGCGGAACCACCACTCAACACACACCAG 60 |||||||||||||||||| | ||||||||||| | ||||||||||||||||||||||||| Sbjct 60 AAAGAAAAAAATCTTTGGAAAATGGATCAAACAGAGGAACCACCACTCAACACACACCAG 119 Query 61 CAGCAACCAGAAGAAGTTGAACATCGTGAGAATGGTGCGTCTAAGATGTTTAGGAAAGTA 120 ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 120 CAGCACCCAGAAGAAGTTGAACATCATGAGAATGGTGCGACTAAGATGTTTAGGAAAGTA 179 Query 121 AAGGCAAGAGCTAAGAAGTTCAAGAACAGTATTACTAAACATG-ATCAAAGCAATGAGCT 179 ||||| |||||||||||||||||||||||| | |||||||||| | ||||||||||||| Sbjct 180 AAGGCTAGAGCTAAGAAGTTCAAGAACAGTCTCACTAAACATGGA-CAAAGCAATGAGCA 238 Query 180 TGA------TCATGATGTAGTTGAAGAAGATGATGAAGATGACGAGCTAGAACCAGAAGA 233 ||| ||||||| | ||||||||||||||||| ||||||||||||||||| |||| Sbjct 239 TGAGCAAGATCATGATTTGGTTGAAGAAGATGATGATGATGACGAGCTAGAACCTGAAGT 298 Query 234 GATCGATGCACCAGGTGTAAAAGGTAAACCAGAGTCTCTGAGTCATCCGAGAGAAACTAA 293 ||||||||||||||| |||| ||||||||| | || | || | | |||| Sbjct 299 GATCGATGCACCAGGCGTAACAGGTAAACC----T-----AG--A---GA-A-A--CTAA 340 Query 294 TGTTCCGGCAGCGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 353 |||||| ||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| Sbjct 341 TGTTCCAGCATCGGAGGAAATTATTCCACCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 400 Query 354 CGATTACACCAAACCCACTGAATCTGTACCA-TCACAGGATACCTCTTACGGACACGATG 412 ||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||| Sbjct 401 CGATTACACCAAACCCACTGAATCTGTACCAGT-ACAAGAGGCCTCTTACGGACACGATG 459 Query 413 CACCGGCTCATTCTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGA 467 ||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| Sbjct 460 CACCGGCTCATTCTGTAAGGACGACGTTTACATCGGACAAGGAAGAGAAAAGAGA 514 Score = 414 bits (224), Expect = 2e-114 Identities = 378/446 (85%), Gaps = 35/446 (8%) Strand=Plus/Plus Query 454 GAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACA---C--TC-CTCTGCTTTCTGCG 507 |||||||| |||||| ||||||| ||| || || ||| | || |||||||||||| | Sbjct 555 GAAGAGAGTAGAGAGACTCATCATGAGTCATTGAACACTCCGGTCTCTCTGCTTTCTG-G 613 Query 508 -ACAGAGGATATCACGAGGACGTTTGCTCC-TGCTGGTGAAGATGATTATCTTGATGGTC 565 ||||||||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||| Sbjct 614 AACAGAGGATGTAACGAGTACGTTTGCTCCAAG-TGGTGATGATGAATATCTTGATGGTC 672 Query 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-GTTGGAGGAAGA-TCCGGCTCTTACAGG 623 ||||||| ||||||| |||||| ||||| || |||||||||||| | ||||| || | Sbjct 673 AACGGAAGGTCAACGTCGAGACCCCGAT-AACGTTGGAGGAAGAGT-CGGCTGTTTC--- 727 Query 624 AGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCAC 683 | || | ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 728 A-GA----C----TATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCAC 778 Query 684 CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTAATATGAA 743 |||||||| || | | | || |||||||||||||| |||||||| ||||||||||| | Sbjct 779 CAAAGAAGAAACT-G-G-AG---GAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGA 832 Query 744 AGTGACTGATGAGTCTCCTGATCAGAAACAAGCACAAGGATTTGAAAGAGACTTGTCGAC 803 ||||||||||||||||||||||||||| | || || | ||||||||||||||||||||| Sbjct 833 AGTGACTGATGAGTCTCCTGATCAGAAGCCAGGAC-A--ATTTGAAAGAGACTTGTCGAC 889 Query 804 GAGAAGCAAAGAATTCAAAGAATTTGATCAGGACTTCGACTCTGTTCCCAGCAAGGATTC 863 ||||||||||||||||||||| |||||||||||||| |||||||||| | | |||||||| Sbjct 890 GAGAAGCAAAGAATTCAAAGAGTTTGATCAGGACTTTGACTCTGTTCTCGGTAAGGATTC 949 Query 864 GCCGGTGAAATTTGCAGGTGAATCAG 889 ||||| ||||||| |||||||||||| Sbjct 950 GCCGGCGAAATTTCCAGGTGAATCAG 975 Score = 100 bits (54), Expect = 5e-20 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2161 TGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAAATCGCCACATTCTGTTGAAGAG 2220 ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 2103 TGGTTTGGTGGTGGTGCGACGGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAG 2162 Query 2221 GCTCCA 2226 ||||| Sbjct 2163 TCTCCA 2168 > AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529 FORWARD LENGTH=2134 Length=2134 Score = 361 bits (195), Expect = 2e-98 Identities = 318/373 (85%), Gaps = 26/373 (7%) Strand=Plus/Plus Query 452 AGGAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACACT-C-----CTCTGCTTTCTG 505 ||| ||||||||||||||||||||| ||| || || ||||| | |||||||||| | Sbjct 683 AGG-AGAGAGCAGAGAGGCTCATCAAGAGCCATTGAACACTCCTGTGTCTCTGCTTTCAG 741 Query 506 CGACAGAGGATATCACGAGGACGTTTGCTCCTGCTGGTGAAGATGATTATCTTGATGGTC 565 | |||||||| | || |||||||||||||||| |||||||||||| ||||| | ||||| Sbjct 742 CAACAGAGGACGTGACTAGGACGTTTGCTCCTGGTGGTGAAGATGACTATCTCGGTGGTC 801 Query 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-G-TTGGAGGAAGATCCGGCT-CTTACAG 622 ||||||||||||||| |||||| || | || | |||||||||||||||||| | | ||| Sbjct 802 AACGGAAAGTCAACGTCGAGACGCC-A-AAACGTTTGGAGGAAGATCCGGCTGC-TCCAG 858 Query 623 GAGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCA 682 ||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 859 GAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCA 918 Query 683 C-CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTA-ATAT 740 | || | |||| |||||||||| ||||||| |||||| ||||||||||||||| | || Sbjct 919 CGCATA-AAGG---TGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGA-AT 973 Query 741 GAAAGTGACTGATGAGTCTCCTGATCAGAAA-CAAGCACAAGGATTTGAAAGA-GACTTG 798 ||||||||||||||||||||||||||||||| |||| ||||||| ||| || ||||| Sbjct 974 GAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAG-ACAAGGACGCGAA-GAAGACTT- 1030 Query 799 TC-GACGAGAAGC 810 || |||||||||| Sbjct 1031 TCCGACGAGAAGC 1043 Score = 243 bits (131), Expect = 8e-63 Identities = 195/226 (86%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 247 GGTGTAAAAGGTAAACC-AGAGTCTCTGAGTCAT-CCGAGAGAAACTAATGTTCCGGCAG 304 ||||||| |||||||| | ||||||| |||||| ||| |||||||||||||||||||| Sbjct 417 GGTGTAACGGGTAAACCTA-AGTCTCTTAGTCATGCCG-GAGAAACTAATGTTCCGGCAT 474 Query 305 CGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTCCGATTACACCA 364 |||||||||||||||||||||||||||| || ||||||||||||||||| || |||||| Sbjct 475 CGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCA 534 Query 365 AACCCACTGAATCTGTACCATCACAGGATACCTCTTACGGACACGATGCACCGGCTCATT 424 |||||| ||| ||||| ||| ||| ||||||||||||||||| || |||| |||| || Sbjct 535 AACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGGCACTGGCTGATC 594 Query 425 CTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGAGGC 470 |||||||||||||||| ||||||| | ||||| || |||||||| Sbjct 595 CTGTAAGAACGACGGAAACATCGGACTGGGAAGCGAAAAGAGAGGC 640 Score = 75.0 bits (40), Expect = 3e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 2265 GGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTCAACCGT 2324 ||| || ||||| ||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 1866 GGT-AAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACCGT 1924 Query 2325 TG 2326 || Sbjct 1925 TG 1926 > AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-13058802 FORWARD LENGTH=2162 Length=2162 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 657 TTATCAGTCCAAAGTTACTGATCCCACC 684 |||||||||||||||||||||||||||| Sbjct 943 TTATCAGTCCAAAGTTACTGATCCCACC 970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117670077480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5