BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950114
Length=434
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily... 680 0.0
AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637288-136... 442 1e-123
AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-72... 302 2e-81
AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma ... 259 1e-68
> AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
protein | chr5:22196477-22197492 FORWARD LENGTH=669
Length=669
Score = 680 bits (368), Expect = 0.0
Identities = 411/432 (95%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 4 GGTGGTTGTTGTTGAAAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAG 63
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 47 GGTTGTTGTTGTTG-AAAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAG 105
Query 64 AAAGCCACATCTCGGAGTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGA 123
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 106 AAAGCTACATCTCGGAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGT 165
Query 124 TTCTTGAAAGCCGGTAAATACGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCC 183
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 166 TTCTTAAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCC 225
Query 184 GCCGTTCTTGAGTATTTGGCCGCCGAGGTTCTTGAATTAGCTGGGAACGCAGCAAGAGAC 243
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 226 GCCGTTCTCGAATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGAC 285
Query 244 AACAAGAAGACACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAG 303
||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct 286 AACAAGAAGACACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAG 345
Query 304 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CTAAGCAAGCTTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCAC 405
Query 364 AATCTCCTTCTCCCTAAGAAGTCTGGTCCTTCAAAGCCACAGGAAGATTAGGTCTTT-AA 422
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 406 AATCTCCTTCTCCCTAAGAAGGCTGGTGCTTCAAAGCCTCAGGAAGATTAGGTCTTTTAA 465
Query 423 CACAATGATATA 434
||||||||||||
Sbjct 466 CACAATGATATA 477
> AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637288-13638419
REVERSE LENGTH=717
Length=717
Score = 442 bits (239), Expect = 1e-123
Identities = 351/404 (87%), Gaps = 11/404 (3%)
Strand=Plus/Plus
Query 20 AAATGGCTGGTCGTGGAAAAAC-TCTTGGATCCGGTGCGGCGAAGAAAG-CCACATCTCG 77
||||||| ||||| || ||||| |||||||| ||||| |||||| ||| | || |||||
Sbjct 93 AAATGGCGGGTCG-GGGAAAACAACTTGGATCTGGTGCAGCGAAG-AAGTCTACTTCTCG 150
Query 78 GAGTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGATTCTTGAAAGCCGG 137
|||||||| ||||| |||||||| || || ||||||||||||||||| |||||||||||
Sbjct 151 TAGTAGCAAGGCTGGGCTTCAATTCCCTGTTGGTCGTATCGCTCGATTTTTGAAAGCCGG 210
Query 138 TAAATACGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCCGCCGTTCTTGAGTA 197
||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 211 TAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATA 270
Query 198 TTTGGCCGCCGAGGTTCTTGA-ATTAGCTGGGAACGCAGCAAGAGACAACAAGAAGACAC 256
| ||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| |
Sbjct 271 CCTCGCCGCTGAGGTACTTGAGCTT-GCTGGGAACGCAGCGAGAGACAACAAGAAGACCC 329
Query 257 GTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGCTT- 315
|||| ||||| || || |||||||| ||||| || || |||||||||||||||||| ||
Sbjct 330 GTATAGTTCCACGACACATTCAGCTTGCTGTGAGGAATGATGAGGAGCTAAGCAAG-TTG 388
Query 316 CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTC 375
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTC 448
Query 376 CCTAAGAAGTCTGGTCCTTCAAAGCC-ACAG--GAAGATTAGGT 416
|| |||||| ||||| | || ||||| || | |||||||||||
Sbjct 449 CCCAAGAAGGCTGGTTCATCTAAGCCTACTGAAGAAGATTAGGT 492
> AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-7230146
FORWARD LENGTH=647
Length=647
Score = 302 bits (163), Expect = 2e-81
Identities = 315/387 (81%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 20 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGCGGCGAAGAAAGCCACATCTCGGA 79
||||||| ||||| || |||||||| ||||| || | || |||||| | ||||| | |
Sbjct 64 AAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTAAGAAATCAACATCGAGAA 123
Query 80 GTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGATTCTT-GAAAG-CCGG 137
| |||||||| ||||| ||||| || || |||||||||||||| || || |||| |||
Sbjct 124 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTCG-TT-TTCTAAAGAACGG 181
Query 138 TAAATACGCCGA-ACGTGTTGGTGCTGGTGCTCCGGTCTATC-TCGCCGCCGTTCTTGAG 195
|| |||| | | |||||||||||| || |||||||| || | | ||||||||||| ||
Sbjct 182 CAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTTTA-CTTAGCCGCCGTTCTCGAA 239
Query 196 TATTTGGCCGCCGAGGTTCTT-GAATTAGCTGGGAACGCAGCAAGAGACAACAAGAAGAC 254
|| | ||||| |||| | || ||||| ||||| |||||||| || || |||||||||||
Sbjct 240 TACCTCGCCGCTGAGG-TATTGGAATTGGCTGGAAACGCAGCTAGGGATAACAAGAAGAC 298
Query 255 -ACGTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGC 313
| | ||||| || ||||| ||||||||||| || ||||||||||||||||| || || |
Sbjct 299 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGGAGCTGAGTAAAC 357
Query 314 TTCTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTC 373
| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 358 TGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTC 417
Query 374 T-CCCTAAGAA-GTCTGGTCCTTCAAA 398
| ||| ||||| | ||||| |||||||
Sbjct 418 TTCCC-AAGAAAG-CTGGTGCTTCAAA 442
> AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma
histone variant H2AX | chr1:20414316-20415287 REVERSE LENGTH=801
Length=801
Score = 259 bits (140), Expect = 1e-68
Identities = 247/298 (83%), Gaps = 10/298 (3%)
Strand=Plus/Plus
Query 85 AAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGATT-CTTGAAAGCCGGTAAATA 143
|||||||||||||||||||| || || | |||||| |||| ||| ||||||||||||||
Sbjct 163 AAAGCTGGTCTTCAATTTCCCGTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGTAAATA 221
Query 144 CGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCCGCCGTTCTTGAGTATTTGGC 203
|||||||||||||||||| |||||||| || |||||| |||||||||| || || | ||
Sbjct 222 CGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGC 281
Query 204 CGCCGAGGTTCTTGAAT-TAGCTGGGAACGCAGCAAGAGACAACAAGAAGACACGTATTG 262
||| ||||| ||| | ||||||| || ||||||||||| ||||||||||||||||| |
Sbjct 282 CGCTGAGGTA-TTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATCG 340
Query 263 TTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGCTTCTTGGA- 321
| || || || |||||||| || || || |||||||| ||||| || || |||||||||
Sbjct 341 TACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAGAGCTTAGTAAACTTCTTGGAA 400
Query 322 GATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCA-CA-ATCTCCTTCTCCC 377
| ||| || ||||||||||||||||| |||| ||||| || || | ||| |||||||
Sbjct 401 G-TGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTCATCAGA-CTC-TTCTCCC 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20609777090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5