BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950116
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54660.1 | Symbols: | HSP20-like chaperones superfamily pro... 920 0.0
> AT5G54660.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:22203905-22205152 FORWARD LENGTH=790
Length=790
Score = 920 bits (498), Expect = 0.0
Identities = 572/608 (94%), Gaps = 3/608 (0%)
Strand=Plus/Plus
Query 1 CATTCGTCTCAATTTCTCTCATGACGAGTTGTAGTGGAAGTCTCAAACTAGAGATCCACA 60
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 26 CATTCGTCTCAATTTCTCTCATGACGAGTAGTAGTGGAAGCCTCAAACTAGAGATCCACA 85
Query 61 CCGACGACAAGACGCCGGGAAAGTGGAGCGTACCTCTCGGCGATGATGTTTTCCGAAGGT 120
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 86 CTGATGACAAGACGCCGGGAAAGTGGAGCGTACCGCTCGGCGATGATGTTTTCCGAAGGT 145
Query 121 TCTTGAGCGGGGGAGGAGGCTCCGAGAAGGCTGTGTTCGGTGAGGGATCTCTTTTTAGCC 180
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 146 TCTTGAGCGGGGGAGGAGGCTCGGAGAAGGCTGTGTTCGGTGAGGGGTCTCTTTTTAGCC 205
Query 181 CCTTTTTGTTCGGGAAGTACTTTGATCCATCAGATGCGTTTCCCTTGTGGGAGTTTGAGG 240
| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| |
Sbjct 206 CGTTTTTGTTCGGGAAGTACTTTGATCCGTCAGACGCCTTTCCGTTGTGGGAATTTGAAG 265
Query 241 CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTTAGGAGGACAGTGTAGAGTCGATTGGTCTC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 266 CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTT---AGGACAGTGTAGAGTCGATTGGTCTC 322
Query 301 AGACCGATCTAGCTTATGTCCTTAAATCTGATATCCCCGTGGTGGGGAAAAATTACGTGC 360
|||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 323 AGACGGATCAAGCTTATGTCCTTAAATCCGATATCCCCGTGGTGGGGAAAAATAACGTGC 382
Query 361 AGGTGTATGTGGACGTTAACGGAAAAGTAATGGAGATTAGTGGCCAGTGGAACAACAACA 420
||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||| |||||
Sbjct 383 AGGTGTACGTGGACATTAACGGAAGAGTGATGGAGATTAGTGGCCAATGGAACAGCAACA 442
Query 421 AGAAAGCGGCGGCTAACGGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC 480
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGAAAGCGGCGACCAACAGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC 502
Query 481 GCCGTCTCGAGCTCCCTTGCGATGCCGACGCCAAAAACTCTGAAGCTTTCCTCTCCAACA 540
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 503 GCCGTCTCGAGCTTCCTAGCGATGCCGACGCCAAATACTCTGAAGCTTTCCTCTCTAACA 562
Query 541 ACGACGACTACTCTTTCTTAGAGATCCGAATCCCTAAGATTAATTCTAAGAACAAGTTTT 600
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 563 ACGACGATTACTCTTTCTTAGAGATCCGAATCCCTAAGATAAATTCTAAGAACAAGTTTT 622
Query 601 AATCTGAT 608
||||||||
Sbjct 623 AATCTGAT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5