BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950116

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54660.1 | Symbols:  | HSP20-like chaperones superfamily pro...   920    0.0  


> AT5G54660.1 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr5:22203905-22205152 FORWARD LENGTH=790
Length=790

 Score =  920 bits (498),  Expect = 0.0
 Identities = 572/608 (94%), Gaps = 3/608 (0%)
 Strand=Plus/Plus

Query  1    CATTCGTCTCAATTTCTCTCATGACGAGTTGTAGTGGAAGTCTCAAACTAGAGATCCACA  60
            ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  26   CATTCGTCTCAATTTCTCTCATGACGAGTAGTAGTGGAAGCCTCAAACTAGAGATCCACA  85

Query  61   CCGACGACAAGACGCCGGGAAAGTGGAGCGTACCTCTCGGCGATGATGTTTTCCGAAGGT  120
            | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  86   CTGATGACAAGACGCCGGGAAAGTGGAGCGTACCGCTCGGCGATGATGTTTTCCGAAGGT  145

Query  121  TCTTGAGCGGGGGAGGAGGCTCCGAGAAGGCTGTGTTCGGTGAGGGATCTCTTTTTAGCC  180
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  146  TCTTGAGCGGGGGAGGAGGCTCGGAGAAGGCTGTGTTCGGTGAGGGGTCTCTTTTTAGCC  205

Query  181  CCTTTTTGTTCGGGAAGTACTTTGATCCATCAGATGCGTTTCCCTTGTGGGAGTTTGAGG  240
            | |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| |
Sbjct  206  CGTTTTTGTTCGGGAAGTACTTTGATCCGTCAGACGCCTTTCCGTTGTGGGAATTTGAAG  265

Query  241  CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTTAGGAGGACAGTGTAGAGTCGATTGGTCTC  300
            |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  266  CTGAGGTTTTGCTGGCGAGCCTTAGGAGCTT---AGGACAGTGTAGAGTCGATTGGTCTC  322

Query  301  AGACCGATCTAGCTTATGTCCTTAAATCTGATATCCCCGTGGTGGGGAAAAATTACGTGC  360
            |||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  323  AGACGGATCAAGCTTATGTCCTTAAATCCGATATCCCCGTGGTGGGGAAAAATAACGTGC  382

Query  361  AGGTGTATGTGGACGTTAACGGAAAAGTAATGGAGATTAGTGGCCAGTGGAACAACAACA  420
            ||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||| |||||
Sbjct  383  AGGTGTACGTGGACATTAACGGAAGAGTGATGGAGATTAGTGGCCAATGGAACAGCAACA  442

Query  421  AGAAAGCGGCGGCTAACGGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC  480
            ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  AGAAAGCGGCGACCAACAGTGACTGGAGAAGCGGCCGGTGGTGGGAACATGGCTATGTCC  502

Query  481  GCCGTCTCGAGCTCCCTTGCGATGCCGACGCCAAAAACTCTGAAGCTTTCCTCTCCAACA  540
            ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct  503  GCCGTCTCGAGCTTCCTAGCGATGCCGACGCCAAATACTCTGAAGCTTTCCTCTCTAACA  562

Query  541  ACGACGACTACTCTTTCTTAGAGATCCGAATCCCTAAGATTAATTCTAAGAACAAGTTTT  600
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  563  ACGACGATTACTCTTTCTTAGAGATCCGAATCCCTAAGATAAATTCTAAGAACAAGTTTT  622

Query  601  AATCTGAT  608
            ||||||||
Sbjct  623  AATCTGAT  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040019906


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5