BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950152
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55000.2 | Symbols: FIP2 | potassium channel tetramerisation... 1515 0.0
> AT5G55000.2 | Symbols: FIP2 | potassium channel tetramerisation
domain-containing protein / pentapeptide repeat-containing
protein | chr5:22318310-22321750 FORWARD LENGTH=1129
Length=1129
Score = 1515 bits (820), Expect = 0.0
Identities = 894/931 (96%), Gaps = 0/931 (0%)
Strand=Plus/Plus
Query 10 CTATCTCTCTCATGGAGACGAGCTCTGACTTGTCTTCCAGGGTTCGTCTTAACATTGGTG 69
|||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 71 CTATCTTTCTCATGGAGACGAGCTCTAACTTGTCTTCCATGGTTCGTCTTAACATTGGTG 130
Query 70 GAAAGAAATTTTGTACGACCATTGATACTTTGACTATCCGTGAGCCAGACTCAATGCTCG 129
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 131 GAAAGAAATTTTGTACGACCATTGATACTTTGACTATTCGTGAGCCAGACTCAATGCTCG 190
Query 130 CAGCGATGTTTAGTGGTCGACATGCAATGTGCCAGGAATCCAAGAAGGGATATGTATTCA 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 191 CAGCGATGTTTAGTGGTCGACATGCAATGTGCCAGGAATCCAAAAAGGGATATGTATTCA 250
Query 190 TAGACAGGGATGGAAAGCACTTCCGTCATATTCTAAATTGGTTGCGTGATGGCGTTGCTC 249
|||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 251 TAGATAGGGATGGGAAGCACTTCCGTCATATTTTAAATTGGTTGCGTGATGGCGTTATTC 310
Query 250 CAAGTTTGTCAGATCCTGATTGTTCTGAACTTTTGCGCGAAGCAGACTACTATCAGCTTC 309
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 311 CTAGTCTGTCAGATCCTGATTGTTCTGAACTTTTGCGGGAAGCAGACTACTATCAGCTTC 370
Query 310 TTGGGCTGAAAGATGGAATAAAAGATTCGAGAAGAGAAGTTGGTGAAGTAGAAGCTGAAT 369
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 371 TTGGACTGAAAGATGGAATAAAAGATTCGAGAAAAGAAGTTGGTGAAGTAGAAGCTGAAT 430
Query 370 TAACGCGTATAGATATCATCAAATGTATACAATCCGAAAGAGTCAGGTTCCGAGGAGTTA 429
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 431 TAACGCGTATAGATATCATCAAATGTATACAAACCGAAAGAGTCAGGTTCCGAGGAGTTA 490
Query 430 ATCTTTCTGGAATCGATCTTTCTAAACTAGATCTATCCCTTGTGGATTTCAGCTATGCTT 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 491 ATCTTTCTGGAATCGATCTTTCTAAACTGGATCTATCCCTTGTGGATTTCAGCTATGCTT 550
Query 490 GTCTCAGGAATGTGTTTTTCTCTCGTACAAATCTTCAGTGTGCCAAATTTCGGGATGCTG 549
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 551 GTCTCAGGAATGTGTTTTTCTCTCGTACAAATCTTCAATGTGCCAAATTTCGGAATGCTG 610
Query 550 ATGCTTCAGGCTCCATCTTTCACAATGCTATTTTGCGCGAGTGTGAGTTTACCGGTGCAA 609
|||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 611 ATGCAGAAGGCTCCATCTTTCACAATGCTATTTTGCGCGAGTGTGAGTTTACCAGCGCAA 670
Query 610 ATCTTAGAGGAGCGTTGTTAGCTGGTACAAATCTTCAGAGTGCAAATTTACAAGATACCT 669
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 671 ATCTTAGAGGAGCGTTGTTAGCTGGTACAAATCTTCAGAGTGCAAATCTACAAGATGCCT 730
Query 670 GCTTAGTGGATTGCAGCTTCTGTGGTGCTGATCTCCGCACTGCACACTTGCAGAATGCGG 729
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 731 GCTTAGTGGGCTGCAGCTTCTGTGGTGCAGATCTCCGCACTGCACACTTGCAGAATGCAG 790
Query 730 ACCTTACAAATGCCAACTTAGAGGGAGCAAATCTAGAAGGTGCAAATTTGAAGGGTGCAA 789
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 791 ACCTTACGAATGCCAACTTAGAAGGAGCAAATCTAGAAGGTGCAAATTTGAAGGGTGCAA 850
Query 790 AATTGAGTAATGCCAACTTCAAAGGAGCAAACCTTCAACGAGCTTACTTGAGGCATGTGA 849
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGTTGAGTAATGCCAACTTCAAAGGAGCAAACCTTCAACGAGCTTACTTGAGGCATGTGA 910
Query 850 ATCTGCGAGAAGCGCATTTGGAAGGAGCAAACCTCGGTGGCGCTAATATGACTGGTGCTA 909
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 911 ATCTGCGAGAAGCGCATATGGAAGGAGCAAACCTCGGTGGTGCTAATATGACCGGTGCTA 970
Query 910 TTCGATAAACTCCATTTGTTCAGACTGACTG 940
| |||||||||||||||||||||||||||||
Sbjct 971 TCCGATAAACTCCATTTGTTCAGACTGACTG 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5