BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950185

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55290.1 | Symbols:  | ATPase, V0 complex, subunit E | chr5:...   403    3e-112
  AT4G26710.1 | Symbols:  | ATPase, V0 complex, subunit E | chr4:...   215    2e-55 


> AT5G55290.1 | Symbols:  | ATPase, V0 complex, subunit E | chr5:22422887-22424268 
REVERSE LENGTH=545
Length=545

 Score =  403 bits (218),  Expect = 3e-112
 Identities = 245/257 (95%), Gaps = 6/257 (2%)
 Strand=Plus/Plus

Query  1    TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  TCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG  219

Query  61   TTGGGATTATTGCTGCCT-TATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT  119
            ||||||| ||||||  || |||||| ||||||||||||||||||||| ||||||||||||
Sbjct  220  TTGGGATAATTGCT-TCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAAT  278

Query  120  CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT  338

Query  180  GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT  239
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  339  GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAGA-T  397

Query  240  CCTCTCTCTACTCAGAC  256
              || ||||||||||||
Sbjct  398  --TC-CTCTACTCAGAC  411


> AT4G26710.1 | Symbols:  | ATPase, V0 complex, subunit E | chr4:13468549-13469935 
FORWARD LENGTH=553
Length=553

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 209/254 (82%), Gaps = 6/254 (2%)
 Strand=Plus/Plus

Query  1    TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTC-GTC  59
            ||||||||  ||  |||||| |||||| |||  || ||||| |||| || |||| | |||
Sbjct  53   TCTCTCTC--ATTGGGATCAGACATGGCTTTTGTTGTAACATCCCTGATATTCG-CTGTC  109

Query  60   GTTGGGATTATTGCTGCCTTATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT  119
            || || || |||||| |  ||||| |||||||||||| ||||| ||| |||||||| |||
Sbjct  110  GTAGGCATCATTGCTTCGATATGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAAT  169

Query  120  CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT  179
            ||| |||||||||| |||||||| || || || |||||||||||||||||||||||||||
Sbjct  170  CTGTTACATCTTACATTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATT  229

Query  180  GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT  239
            ||||| ||||| |||||||| ||||| |||||||| ||| |||||||    |||||||| 
Sbjct  230  GTATACATTGCGCAGATGAACCCTCTCATTGTCCCTATCTTAAGCGAGGTGGAGTAGAAA  289

Query  240  CCTCTCTCTACTCA  253
            ||  | ||||||||
Sbjct  290  CCA-T-TCTACTCA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11662117768


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5