BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950185 Length=256 Score E Sequences producing significant alignments: (Bits) Value AT5G55290.1 | Symbols: | ATPase, V0 complex, subunit E | chr5:... 403 3e-112 AT4G26710.1 | Symbols: | ATPase, V0 complex, subunit E | chr4:... 215 2e-55 > AT5G55290.1 | Symbols: | ATPase, V0 complex, subunit E | chr5:22422887-22424268 REVERSE LENGTH=545 Length=545 Score = 403 bits (218), Expect = 3e-112 Identities = 245/257 (95%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1 TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 TCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG 219 Query 61 TTGGGATTATTGCTGCCT-TATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT 119 ||||||| |||||| || |||||| ||||||||||||||||||||| |||||||||||| Sbjct 220 TTGGGATAATTGCT-TCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAAT 278 Query 120 CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT 338 Query 180 GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT 239 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 339 GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAGA-T 397 Query 240 CCTCTCTCTACTCAGAC 256 || |||||||||||| Sbjct 398 --TC-CTCTACTCAGAC 411 > AT4G26710.1 | Symbols: | ATPase, V0 complex, subunit E | chr4:13468549-13469935 FORWARD LENGTH=553 Length=553 Score = 215 bits (116), Expect = 2e-55 Identities = 209/254 (82%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 1 TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTC-GTC 59 |||||||| || |||||| |||||| ||| || ||||| |||| || |||| | ||| Sbjct 53 TCTCTCTC--ATTGGGATCAGACATGGCTTTTGTTGTAACATCCCTGATATTCG-CTGTC 109 Query 60 GTTGGGATTATTGCTGCCTTATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT 119 || || || |||||| | ||||| |||||||||||| ||||| ||| |||||||| ||| Sbjct 110 GTAGGCATCATTGCTTCGATATGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAAT 169 Query 120 CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT 179 ||| |||||||||| |||||||| || || || ||||||||||||||||||||||||||| Sbjct 170 CTGTTACATCTTACATTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATT 229 Query 180 GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT 239 ||||| ||||| |||||||| ||||| |||||||| ||| ||||||| |||||||| Sbjct 230 GTATACATTGCGCAGATGAACCCTCTCATTGTCCCTATCTTAAGCGAGGTGGAGTAGAAA 289 Query 240 CCTCTCTCTACTCA 253 || | |||||||| Sbjct 290 CCA-T-TCTACTCA 301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11662117768 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5