BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950218

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55620.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   542    1e-153


> AT5G55620.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G09950.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:22530202-22530939 FORWARD LENGTH=738
Length=738

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 332/350 (95%), Gaps = 5/350 (1%)
 Strand=Plus/Plus

Query  1    TCTTGAAATCAAACCAAGACAATGGAAATGAAATTGCTCTTTACCA-CGGCTTTTACTCA  59
            |||| ||||| |||||||||||||||||||||||||||||||| || ||||||| || ||
Sbjct  152  TCTTAAAATC-AACCAAGACAATGGAAATGAAATTGCTCTTTA-CATCGGCTTTCACCCA  209

Query  60   AATGTTCGGCTACTCGAACCACATGGATCAAACCAGCAACTGCCAAAGCACCCGCAACAA  119
            ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  210  AATGTTCGGCTACTCGAACCATATGGATCAAGCCAGCAACTGCCAAAGCACCCGCAACAA  269

Query  120  AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTTCCTCTTCACTA  179
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  270  AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTCCCTCTTCACTA  329

Query  180  CCCTAAATACTCCAAGTCTGATTACGAAGCCATGAATGATCTCCGCCTTGACTTGCTCCT  239
            |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||
Sbjct  330  CCCTAAATACTCCAAGTCTGATTACGAAGTTATGGATGATCTCCGCCTTGACTTGCTCCT  389

Query  240  CAAACAATATGGATTCTCATTCGAAGGATCTCTTGAAGACAAAAGGGTTTTTGCAATTGA  299
            |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct  390  CAAACAATATGGATTCTCCTTTGAAGGATCTCTTGAAGACAAGAGGGTTTTTGCAATTGA  449

Query  300  ATCATTTCTCTGGCCTGATCAGCTTTAG--GGTTTATGTTGGTGTTGAAT  347
            ||||||||||||||||||||||||||||  ||| ||||||||||||||||
Sbjct  450  ATCATTTCTCTGGCCTGATCAGCTTTAGATGGTCTATGTTGGTGTTGAAT  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16236482927


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5