BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950218 Length=347 Score E Sequences producing significant alignments: (Bits) Value AT5G55620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 542 1e-153 > AT5G55620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22530202-22530939 FORWARD LENGTH=738 Length=738 Score = 542 bits (293), Expect = 1e-153 Identities = 332/350 (95%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 1 TCTTGAAATCAAACCAAGACAATGGAAATGAAATTGCTCTTTACCA-CGGCTTTTACTCA 59 |||| ||||| |||||||||||||||||||||||||||||||| || ||||||| || || Sbjct 152 TCTTAAAATC-AACCAAGACAATGGAAATGAAATTGCTCTTTA-CATCGGCTTTCACCCA 209 Query 60 AATGTTCGGCTACTCGAACCACATGGATCAAACCAGCAACTGCCAAAGCACCCGCAACAA 119 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 210 AATGTTCGGCTACTCGAACCATATGGATCAAGCCAGCAACTGCCAAAGCACCCGCAACAA 269 Query 120 AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTTCCTCTTCACTA 179 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 270 AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTCCCTCTTCACTA 329 Query 180 CCCTAAATACTCCAAGTCTGATTACGAAGCCATGAATGATCTCCGCCTTGACTTGCTCCT 239 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 330 CCCTAAATACTCCAAGTCTGATTACGAAGTTATGGATGATCTCCGCCTTGACTTGCTCCT 389 Query 240 CAAACAATATGGATTCTCATTCGAAGGATCTCTTGAAGACAAAAGGGTTTTTGCAATTGA 299 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 390 CAAACAATATGGATTCTCCTTTGAAGGATCTCTTGAAGACAAGAGGGTTTTTGCAATTGA 449 Query 300 ATCATTTCTCTGGCCTGATCAGCTTTAG--GGTTTATGTTGGTGTTGAAT 347 |||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 450 ATCATTTCTCTGGCCTGATCAGCTTTAGATGGTCTATGTTGGTGTTGAAT 499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16236482927 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5