BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950227
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55710.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1122 0.0
> AT5G55710.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised conserved
protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:22554878-22555650
REVERSE LENGTH=773
Length=773
Score = 1122 bits (607), Expect = 0.0
Identities = 650/671 (97%), Gaps = 2/671 (0%)
Strand=Plus/Plus
Query 1 TGAAACAGAAACAGAGCTAAATGGCAATAATATCTCAGCTTTTTGCTCCATTGCCATCTC 60
||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 7 TGAAACAAAAACAGAGCAAAATGGCAATAATATCTCAGTTTTTTGCTCCATTACCATCTC 66
Query 61 TCACCGGAACCCTAACCCTAACCGGTCGTTCTTTTCTCCCTCTAAACTCTAG-TACCCAA 119
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 67 TCACCGGAACCCTAACCCTAACCGGTCGTTCTTTTCTCCCTCTAAAC-CTTGATACCCAA 125
Query 120 TTCCCAAAACCTAGACTTTCCAGAGAAAGAGCCGCCACACTCGTACTCCAATCCAAGGGT 179
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 126 TTCCCAAAACCTAGACTTTCCAGGGACAGAGCCGCCACACTCGTACTCCAATCCAAGGGT 185
Query 180 GACGATTCCGTCGACGCATCAGATCGGATAATCTCAGCCGTCTGTTACTTCTACCCATTC 239
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 186 GATGATTCCGTCGATGCATCGGATCGGATAATCTCAGCCGTCTGTTACTTCTACCCATTC 245
Query 240 TTCGATGGGATTCAATACGGTAAATTCATCATCACACAGTACCAACCATTTCAGATTCTC 299
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 246 TTCGATGGGATTCAATACGGCAAATTCATCATCACACAGTACCAACCTTTTCAGATTCTC 305
Query 300 ATCCAACCTTTGTTTCCCGCCATCAGAGCTTTCAAGAGCTTCCCTTTCAATGGGTTTCTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ATCCAACCTTTGTTTCCCGCCATCAGAGCTTTCAAGAGCTTCCCTTTCAATGGGTTTCTT 365
Query 360 ATCTTCATCACTCTCTACTTCGTCGTCGTGAGGAACCCTAATTTCAGCAGGTACGTTAGG 419
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 366 ATCTTCATCACTCTCTACTTCGTCGTTGTGAGGAACCCTAATTTCAGCAGGTACGTCAGG 425
Query 420 TTCAACACGATGCAGGCGATTGTGCTTGATGTGTTGTTGATTTTCCCGGATTTGCTTGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTCAACACGATGCAGGCGATTGTGCTTGATGTGTTGTTGATTTTCCCGGATTTGCTTGAG 485
Query 480 AGGAGCTTTAATCCAAGAGATGGGTTTGGTTTAGATGTGGTGATGAGTTTGGACAGCACA 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGGAGCTTTAATCCTAGAGATGGGTTTGGTTTAGATGTGGTGATGAGTTTGGACAGCACA 545
Query 540 GTGTTCCTCTTCTTGCTTGTCTCTTTGATCTATGGATTCTCTGCTTGCTTGTTTGGTCTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GTGTTCCTCTTCTTGCTTGTCTCTTTGATCTATGGATTCTCTGCTTGCTTGTTTGGTCTG 605
Query 600 ATCCCGAGGTTGCCTCTTGTTGCTGAGGCTGCTGATAGGCAAGTCCTTTGATGCAATAAT 659
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 606 ACCCCGAGGTTGCCTCTTGTTGCCGAGGCTGCTGATAGGCAAGTCCTTTGATTCAATAAT 665
Query 660 ATGTTTGTATG 670
|| ||||||||
Sbjct 666 ATCTTTGTATG 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5