BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950295 Length=2005 Score E Sequences producing significant alignments: (Bits) Value AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein | chr5... 3083 0.0 > AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein | chr5:22823302-22828025 REVERSE LENGTH=2303 Length=2303 Score = 3083 bits (1669), Expect = 0.0 Identities = 1905/2014 (95%), Gaps = 36/2014 (2%) Strand=Plus/Plus Query 1 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTGGTAATATCATT-CTTGGTCTCCGTCTCT 59 ||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||| Sbjct 56 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTAGTAATATC-TTCCTTTGTCTCCGTCTCT 114 Query 60 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTTCTATTAGATCAACCTCGTCTCCACCT 119 ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 115 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTGCCATTAGATCAAGCTCGTCTCCACCG 174 Query 120 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCTGAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 175 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCAGAG 234 Query 180 ATAAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAACTTAATGATGATTTCTGT 239 || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 235 ATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGT 294 Query 240 GATTGTCCTGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAAATGGAAAATTCTAT 299 |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 295 GATTGTTCAGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAACTGGAAAATTCTAT 354 Query 300 TGTCGGAATGCCGGCCACTCTCCGTTGGTTTTGTTTTCTTCCAGAGTCAATGATGGTATT 359 || ||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 355 TGCCGGAACGCCGGCCACTCTCCGGTGATTTTGTTTTCTTCCAGAGTTAATGATGGTATT 414 Query 360 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCAAGTGTCATGCCAAAATACATGT 419 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 415 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCACGTATCATGCCAAAATACATGC 474 Query 420 TGGGAAGCTGGGAAAGCTGCTCGAGAAAATCTGAAGaaaaaaaTTGAAACATATAATCAA 479 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 475 TGGGAAGCTGGAAAAGCTGCTCGAGAAAATCTGAAGAAGAAAATTGAAACATATAATCAA 534 Query 480 GGGCTTGTAGTAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTAGAGAAAGATGCA 539 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 535 GGGCTTGTAATAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTGGAGAAAGATGCA 594 Query 540 GCAGAATTGAAGAAGCTGAAAAGTGAAG-AGAAGATTCTGAAAGGCCTTGTTGATCAGCT 598 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 595 GCAGAATTGAAGAAGCTGAAAAGTG-AGCAGAAGATTCTGAAAGGCCTTGTTGATCAGCT 653 Query 599 TAAAGATCGTAAAGAACAAATTgagaaggtagaggagaaggagcgtctacagaaagaaaa 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GAAAGATCGTAAAGAACAAATTGAGAAGGTAGAGGAGAAGGAGCGTCTACAGAAAGAAAA 713 Query 659 ggaggagaaggaaaagaaagaggCCGAATTAGCAGCCCAGCAAGGAAAGGGGGATGCTGA 718 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 714 GGAGGAAAAGGAAAAGAAAGAGGCCGAATTAGCAGCCCAGCAAGGAAAAGGGGATGCTGA 773 Query 719 GGAGAAGACAGATGACAATGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGGCGCCTGA 778 ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 774 GGAGAAGACAGATGACAGTGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGACGCCTGC 833 Query 779 AGTTTCACAGCACGATGAAAATCCCGATGAAACCACACATCATGATGAGATTGGTAATTA 838 ||||||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 834 AGTTTCACA--AC-------A---CGATGAAACCACACATCATGATGAGATTGGTAATTA 881 Query 839 CAAAGATTATCCTTCAGAAGAGGAGCCAGCTGCTGAAGCTGAAGCTAACCCAACAGCAAC 898 ||| |||||||||||||| ||||||||| || |||||||| | ||| |||| Sbjct 882 CAAGGATTATCCTTCAGATGAGGAGCCA---GC---AGCTGAAGGT----GAAC--CAAC 929 Query 899 AAGTATATTGGAAGAGGCTACTCACACTCATCCAGCAGACGAGCATGTTGTGGAGACG-A 957 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 930 AAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGCATGTTGTGGAGA-GAA 988 Query 958 AGGAGGAATCTCCCTCATCTGAGGATT-C-CGT----CACAGAAGGGTCTCAAAATGATG 1011 | ||||||||| ||||||||||||||| | | | |||||| | ||||||||||||| Sbjct 989 AAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATG 1048 Query 1012 GTAGTACCAAAAAAGAGGAATCAAACGAGGTTAAGAAAGTGGAGGATCTTGTAACCGAAA 1071 ||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||| | Sbjct 1049 GTAGTGCTGAAAAGGAGGAATCAGACGAGGTTAAGAAAGTGGAGGATTTTGTAACCGAGA 1108 Query 1072 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1109 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1168 Query 1132 AGAAATCTGATAAGCCAACTGAGGCAGACGATAGCCCCAAAGCTGATGATCAGGAAAACC 1191 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1169 AGAAATCTGATAAGCCAACTGAGGCAGACGATATCCCCAAAGCTGATGATCAGGAAAACC 1228 Query 1192 ATGAGCACACGCCCACCACTCCACATGAAGTAGATGAAGATGATGGATTTGTTTCAGATG 1251 ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1229 ATGAGCACACGCCCATCACTGCACATGAAGCAGATGAAGATGATGGATTTGTTTCAGATG 1288 Query 1252 GTGACGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCCGAAGATGATTCCT 1311 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1289 GTGATGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCTGAAGATGATTCCT 1348 Query 1312 ATGAAGAGGAGTATCGCCATGATTCTACTTCTTCATACAAATCTGATGCCGATGATGATG 1371 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1349 ATGAAGAGGAGTATCGCCATGATTCTAGTTCTTCATACAAATCTGATGCAGATGATGATG 1408 Query 1372 TCGATTTTTCAGAGTCAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1431 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1409 TCGATTTTTCAGAGACAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1468 Query 1432 AGAACATTTTGCAGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCGGAGGCTG 1491 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1469 AGAACATTTTGCTGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCAGAGGCTG 1528 Query 1492 ATCGGGTACGCAAAGAATACGACGAGTCGAGCTCCAAACTGCACAAAATACAGTCAAGGA 1551 |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| Sbjct 1529 ATCGGGTACGCAAAGAATACGACGAGTCAAGCTCCAAACTGAATAAAATACAGTCAAGGA 1588 Query 1552 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCGGAGAAAGAGTTCTATTCAT 1611 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1589 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCAGAGAAAGAGTTCTATTCAT 1648 Query 1612 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1649 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1708 Query 1672 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAATGGGACAAATTTG 1731 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1709 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAGTGGGACAAATTTG 1768 Query 1732 AGAACTCTTACCAATTCATGTCATATACCAACGGAGATAAATGCTGGAACGGTCCCGATA 1791 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1769 AGAACTCTTACCAATTCATGTCATATACCAACGGAGAAAAATGCTGGAATGGTCCCGATA 1828 Query 1792 GAAGCCTTAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1851 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1829 GAAGCCTGAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1888 Query 1852 CAAGCCGTTGCGAATATGCGGCGATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1911 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1889 CAAGCCGTTGCGAATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1948 Query 1912 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCCCAGAATCACG 1971 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1949 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCTCAGAATCACG 2008 Query 1972 ACGAACTCTGATCATTTCCATCTGAAATAATTCT 2005 ||||||||||||||||| || ||||||||||||| Sbjct 2009 ACGAACTCTGATCATTTTCACCTGAAATAATTCT 2042 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99346878555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5