BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950321

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27410.3 | Symbols: RD26 | NAC (No Apical Meristem) domain t...   283    9e-76


> AT4G27410.3 | Symbols: RD26 | NAC (No Apical Meristem) domain 
transcriptional regulator superfamily protein | chr4:13707900-13709013 
REVERSE LENGTH=973
Length=973

 Score =  283 bits (153),  Expect = 9e-76
 Identities = 169/176 (96%), Gaps = 3/176 (2%)
 Strand=Plus/Plus

Query  197  CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACTACCCCGGTTCAAGCTTGTCGTGA  256
            |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||
Sbjct  531  CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACT---CCTGTTCAAGCTTGTCGTGA  587

Query  257  AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCGTCTCAGCTTGACGACGTTCTTGA  316
            |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  588  AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGA  647

Query  317  TTCGTTCCCGGAGATAAAAGATCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA  372
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  648  TTCGTTCCCGGAGATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA  703


 Score =  250 bits (135),  Expect = 9e-66
 Identities = 143/147 (97%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  54   AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCC  113
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  355  AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCC  414

Query  114  GGAAAAGCTCCCAAAGGCACTAAAACAAACTGGATTATGCACGAGTATCGCTTAATCGAG  173
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || 
Sbjct  415  GGAAAAGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAA  474

Query  174  CATTCTCGTAGCCATGGAAGCTCCAAG  200
            |||||||||||||||||||||||||||
Sbjct  475  CATTCTCGTAGCCATGGAAGCTCCAAG  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5