BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950420
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57340.2 | Symbols: | unknown protein; Has 35333 Blast hits... 1186 0.0
> AT5G57340.2 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23227300-23229203
FORWARD LENGTH=1602
Length=1602
Score = 1186 bits (642), Expect = 0.0
Identities = 731/771 (95%), Gaps = 17/771 (2%)
Strand=Plus/Plus
Query 5 TATATGACTCTACGTTTCAGGCATGGGAACAAAGATCGTTGAGCGAATTACGACAAACCC 64
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 757 TATATGA--CTACGTTTCAGGCATGGGAACAAAGATCGTTGAGCGAATTACTACAAACCA 814
Query 65 ACGTGGATTAAAGAGTGTTGATCATAGTGGATTCATCAGATTTGTTGTTAATGGTCGACA 124
| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 AAGTGGCTTAAAGAGTGTTGATCATAGTGGGTTCATCAGATTTGTTGTTAATGGTCGACA 874
Query 125 GGAATCGTCAAAAGAGACGTTGACAGACGAGAAAGAGGAGGAAGAAGAAGAAGGGGTTTT 184
||||||||||| |||||||||||||||||| || | ||||||| | | |||||
Sbjct 875 AGAATCGTCAAAGGAGACGTTGACAGACGAG---GA--A-GAAGAAG--G-A---GTTTT 922
Query 185 TATTTTAAGATCAATGGATAGGTTTCTTGAAAAACAAAATGCTGAATCCATCAGAAATAC 244
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 923 TATTTTAAGGTCAATGGATAGGTTTCTTGAAAAGCAAAATGCTGAATCCATCAGACATAC 982
Query 245 AATGCAAGCCCAAGAAGATATTTTTAAGCAACAGGTACGAGAGCTACATAGAGTATATAA 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 AATGCAAGCCCAAGAAGATATTTTTAAGCAACAGGTACGAGAGCTACATAGAGTATATAA 1042
Query 305 TACACAGAAAATGATGATGAATCAACTCAAACATAGAAGACAATATTGGACTGTTAACAA 364
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1043 TACACAGAAAATGATGATGACTCAACTCAAACATAGAAGCCAATATTGGACTGTTAACAA 1102
Query 365 CAAAGACCAAACCGGTTCACGAGAGAGAACCGGAAGTTGTTCAGGCATAGACCTCGAAAA 424
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CAAAGACCAACCCGGTTCAAGAGAGAGAACCGGAAGTTGTTCAGGCATAGACCTCGAAAA 1162
Query 425 TGTGGTTAGAGCAACACAAACGACGACGGATCATATTGAAGAGAGCGAACTCGAATTGAC 484
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1163 TGTGGTTAGAGCAACACAAACGACGACGGATCATATCGAAGAGAGCGAACTCGAATTGAC 1222
Query 485 ACTGAGCATTGGATTGTCTTCTTCATCTACTACTATGACCACGACGACGAACAAGGACAT 544
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1223 ATTGAGCATTGGATTGTCTTCTTCATCTACTACTATGACCACGACAACGAACAAGGACAT 1282
Query 545 GGACTATTCATCAACAACGTCGATGAGATCATCATCGGataattgtaataatcagagcaa 604
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1283 GGACTACTCGTCAACAACGTCAATGAGATCATCATCGGATAATTGTAATAATCAGAGCAA 1342
Query 605 taataa--ta-acaataacagtaataataaCCAAGAAAGTAGCGGACCAAACACCCCTAT 661
|||||| || | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1343 TAATAATCTATATAATAACAGCAATAATAACCAAGAAAGTAGCGGACCAAACACGCCTAT 1402
Query 662 GAGCAGCTCAAGTACGACGTCGTTGGATCGAGAGAAGAAGAGACCTCATTGGCTCTTTCA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GAGCAGCTCAAGTACGACGTCGTTGGATCGAGAGAAGAAGAGACCTCATTGGCTCTTTCA 1462
Query 722 AGGACTTAGTATTAACCGAACCTCTTCTTGATTTTTGTTAATTCACTGACT 772
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AGGACTTAGTATTAACCGAACCTCTTCTTGATTTTTGTTAATTCACTGACT 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5