BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950455
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57630.1 | Symbols: CIPK21, SnRK3.4 | CBL-interacting protei... 2115 0.0
AT5G57565.1 | Symbols: | Protein kinase superfamily protein | ... 531 8e-150
> AT5G57630.1 | Symbols: CIPK21, SnRK3.4 | CBL-interacting protein
kinase 21 | chr5:23340847-23343258 REVERSE LENGTH=1611
Length=1611
Score = 2115 bits (1145), Expect = 0.0
Identities = 1243/1291 (96%), Gaps = 4/1291 (0%)
Strand=Plus/Plus
Query 6 TCTCTCTGTTTCTGAGATGGGTTTGTTTGGAACGAAGAAGATTGGCAAGTATGAGATAGG 65
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 100 TCTCTCTGTTTCTGAGATGGGTTTGTTTGGAACGAAGAAGATCGGGAAGTATGAGATAGG 159
Query 66 AAGAACAATCGGAGAAGGGAATTTCGCAAAAGTGAAACTTGGTTACGACACAACCAATGG 125
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 160 AAGAACAATCGGAGAAGGGAATTTCGCAAAAGTGAAACTTGGTTACGACACGACCAATGG 219
Query 126 TACTTACGTAGCTGTCAAAATCATAGATAAGGGTTTGGTTATTCAAAAGGGTCTAGAGTC 185
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 220 TACTTACGTAGCTGTCAAAATCATAGACAAGGCTTTGGTTATTCAAAAGGGTCTTGAGTC 279
Query 186 TCAAGTCAAGAGAGAGATACGAACCATGAAGCTTCTTAACCATCCCAACATCGTACAAAT 245
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 280 TCAAGTCAAGAGAGAGATACGAACGATGAAGCTTCTTAACCATCCCAACATCGTCCAAAT 339
Query 246 ACACGAGGTGATTGGAACCAAGACAAAGATCTGTATTGTTATGGAATACGTTGCAGGTGG 305
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 340 ACACGAGGTGATTGGAACCAAGACAAAGATCTGTATAGTTATGGAATACGTTTCAGGTGG 399
Query 306 TCAGCTTTCAGACAGACTTGGAAGACAGAAAATGAAAGAATCAGATGCTAGAAAACTTTT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TCAGCTTTCAGACAGACTTGGAAGACAGAAAATGAAAGAATCAGATGCTAGAAAACTTTT 459
Query 366 CCAACAATTGATTGATGCTGTTGATTATTGTCATAACAGAGGAGTTTATCATAGAGATCT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCAACAATTGATTGATGCTGTTGATTATTGTCATAACAGAGGAGTTTATCATAGAGATCT 519
Query 426 TAAGCCACAAAATTTGTTACTAGATTCAAAGGGTAATCTCAAAGTTTCTGACTTTGGATT 485
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TAAGCCACAAAACTTGTTACTAGATTCAAAGGGTAATCTCAAAGTTTCTGACTTTGGATT 579
Query 486 AAGTGCAGTTCCTAAATCAGGGGATATGCTCTCTACAGCTTGTGGCTCTCCATGTTATAT 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AAGTGCAGTTCCTAAATCGGGGGATATGCTCTCTACAGCTTGTGGCTCTCCATGTTATAT 639
Query 546 AGCACCAGAGCTGATTATGAACAAAGGCTACTCAGGAGCAGCAGTAGATGTATGGTCTTG 605
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AGCACCAGAGTTGATTATGAACAAAGGCTACTCAGGAGCAGCAGTAGATGTATGGTCTTG 699
Query 606 TGGAGTGATTCTATTTGAATTGCTTGCTGGTTATCCACCTTTCGATGATCATACGCTTCC 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 TGGAGTGATTCTATTTGAATTGCTTGCTGGTTATCCACCTTTCGATGATCATACACTTCC 759
Query 666 GGTTTTGTATAAGAAGATACTCAGAGCAGATTACAAGTTCCCACCTGGATTCACCAAAGA 725
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 760 GGTTTTGTATAAGAAGATACTCAGAGCAGATTACACGTTCCCACCTGGATTCACTGGAGA 819
Query 726 GCAGAAGAGGCTAATCTTTAACATTCTTGACCCAAATCCTCTGAGGCGTATGACAATAGC 785
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||
Sbjct 820 GCAGAAGAGGCTAATCTTTAACATTCTTGACCCAAATCCTCTAAGTCGTATAACACTAGC 879
Query 786 TGAGATAATCATCCAAGATTCTTGGTTCAAGATAGATTATGCACCAGCTTATCACCAAGT 845
||||||||||||| ||||||||||||||||||||| |||| |||||| |||||| ||| |
Sbjct 880 TGAGATAATCATCAAAGATTCTTGGTTCAAGATAGGTTATACACCAGTTTATCATCAACT 939
Query 846 TTCAGACTCAATCAAGGAAAATGTCGCGGAGATAAATGCAGCAACCGCGTCTTCAAACTT 905
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 940 TTCAGACTCAATCAAGGACAATGTCGCGGAGATAAATGCAGCAACCGCGTCATCAAATTT 999
Query 906 CATAAATGCTTTTCAGATAATAGCAATGTCTAGTGATCTAGATTTGTCAGGTCTCTTCGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CATAAATGCTTTTCAGATAATAGCAATGTCTAGTGATCTAGATTTGTCAGGTCTCTTCGA 1059
Query 966 AGAAAATGATGATAAAAGATATAAAACAAGAATTGGGTCCAAGAACACAGCACAAGAAAC 1025
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGAAAATGATGATAAGAGATATAAAACAAGAATTGGGTCCAAGAACACAGCACAAGAAAC 1119
Query 1026 AATCAAGAAGATTGAAGCTGCAGCAACTGATGTTAGCTTATCAGTTGAAAGAATAAAGCA 1085
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 1120 AATCAAGAAGATTGAAGCTGCAGCAACTTATGTTAGTTTATCAGTTGAGAGAATAAAGCA 1179
Query 1086 CTTCAAGGTTAAGATTCAGCCAAAAGAGATAAGATCAAGATCATCTTATGACTTGTTATC 1145
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 1180 CTTCAAGGTTAAGATTCAGCCAAAGGAGATAAGATCAAGATCTTCTTATGACTTATTATC 1239
Query 1146 AGCAGAGGTGATAGAGGTGACTCCAACCAATTGTGTTATAGAAATATCGAAATCTGCAGG 1205
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1240 AGCAGAGGTGATAGAGGTGACTCCAACAAATTGTGTTATAGAAATATCGAAATCCGCAGG 1299
Query 1206 CGAGTTAAGACTATACATGGAGTTTTGCCAGAGTTTATCGAGCTTACTTACAGCGGAAGT 1265
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1300 CGAGTTAAGACTATACATGGAGTTTTGCCAGAGCTTATCAAGCTTACTTACCGCGGAAGT 1359
Query 1266 AAGCTAAGA--GAG--CCATAGATTATCAAG 1292
||||||||| ||| ||||||||| |||||
Sbjct 1360 AAGCTAAGATAGAGAGCCATAGATTCTCAAG 1390
> AT5G57565.1 | Symbols: | Protein kinase superfamily protein
| chr5:23310346-23311564 FORWARD LENGTH=1028
Length=1028
Score = 531 bits (287), Expect = 8e-150
Identities = 303/310 (98%), Gaps = 3/310 (1%)
Strand=Plus/Plus
Query 247 CACGAGGTGATTGGAACCAAGACAAAGATCTGTATTGTTATGGAATACGTTGCAGGTGGT 306
||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 594 CAC-AGGTGATTGGAACCAAGACAAAGATCTGTATAGTTATGGAATACGTTTCAGGTGGT 652
Query 307 CAGCTTTCAGACAGACTTGGAAGACAGAAAATGAAAGAATCAGATGCTAGAAAACTTTTC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CAGCTTTCAGACAGACTTGGAAGACAGAAAATGAAAGAATCAGATGCTAGAAAACTTTTC 712
Query 367 CAACAATTGATTGATGCTGTTGATTATTGTCATAACAGAGGAGTTTATCATAGAGATCTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CAACAATTGATTGATGCTGTTGATTATTGTCATAACAGAGGAGTTTATCATAGAGATCTT 772
Query 427 AAGCCACAAAATTTGTTACTAGATTCAAAGGGTAATCT-CAAAGTTTCTGACTTTGGATT 485
||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 773 AAGCCACAAAACTTGTTACTAGATTCAAAGGGTAATCTACAA-GTTTCTGACTTTGGATT 831
Query 486 AAGTGCAGTTCCTAAATCAGGGGATATGCTCTCTACAGCTTGTGGCTCTCCATGTTATAT 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAGTGCAGTTCCTAAATCGGGGGATATGCTCTCTACAGCTTGTGGCTCTCCATGTTATAT 891
Query 546 AGCACCAGAG 555
||||||||||
Sbjct 892 AGCACCAGAG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5